Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0789 ATGTCAAACAATTTAGTTTCACAGCAGCTGCCAATACCAAGCATGCAGATGAGTCAGGTGGAGCCCACTGTGAGCAAAGTTGACTCATCAGGAAGAGACTCGCAGATTGGACTCATAGGCTCTGCATCTAGTGATTCTATGTCTCAGCAACAGGGAACATCAAATAATCATATTGGATTATCAAGAGATGTTCCTGGGGATCCTGGAAGCCAAGGATTGGCAATGTCAGTCATGCAGAGTGGGCAGATAGATTCCCATGCAATTAGTCTTGGGATGCATCACCTTGTTGCACCTAATAAACGGTCCATGCAAATGGATATGAGGCTGAACAGTACGGGTCCACAGCAGCTGTCAACATTACCCAAGCGAAAGGCAGCTACAGAACCATTGTCAAGTAGCTCTGTGACATCCAATAAGCGGCCTGCACAAATGGATAGACCTTGGTTGCAGCAAGTATCTAATGCATCACCTAAAGGTTCTCAGCAGATCCATCCTCAATCTAATTCCCCTAGGCCACAGCAGCTGTCGGGTGCATCTGGTAAGAGAAAAACACAGATGGAATCCACACTAAGCAAAGCAGGGACTCCTCGATCCTCTAATTCTAAGAGTCACAATTCACATATGCAACAATCATCCAGGACTCAAACAGAATCATCTGGATTAGTTAGGTCCAAGATGAGGGAGTCATTAGCTGCTGCTCTGGCCTTGGTTTCTCAGCAAGATAGACATGAAGATGAAAAGAATAATACATTGAATGGGGCTGGTAATGCTCAGGGTAAATTAGATAACAGTTCTCAGTGTGCATCTGCTGCTACTGATGCTCCTCAGGTTAAAACGCAGGTTTCGGAAACTATTGATTATGCTTCTGCTGTAAATGATACGTCTGAAGATACAACTAAGGATCACCCACAGACTTTGGCCTGCAATGAAGGTTATTTTGAAAAATGCCAGGACAGTGCAGTTGAATCCACAAACATGTTAAATTTTACACCTGTCACAACCTGTGATAAGCAAGACTTCCAGTCAAGTTACACTTTGACTACTGATGATGTTCCTTTCAGTGATACATTTTTTGTTAAAGATGATCTTTTGCAGGGGAACGGTCTTTCTTGGGTATTGGACTCTGAAATGGTTGACTTGTCAATTCAACCGGAAATCCAAAGTAATGAAGATCAGAGATTGGAATCTGAGGAAGTAGGTGGTGCTTGTAGAGAGCAGACTGTCAACTCACCTGAACTTTTGGCATCGATGATAGAAGCAGAACTCTTCAAACTATTTGGAGGTGTGAATAAGAAGTACAAAGAGAAGGGGAGGTCTCTTTTGTTCAATTTGAAAGACCGGAATAATCCTGAATTGAGAGAAAGGGTTATGTCTGGTGAAATCCCCCCTGAGCGATTATGTTCCATGACGGCAGAGGAACTTGCTTCAAAGGAGCTTTCTCAGTGGCGGATGGCGAAAGCTGAGGAGTTTGCTCAAATGGTGGTTTTACCTGATTCTGATGGTGATTTTAGACGTTTGGTCAAGAAAACACACAAGGGTGAATTTCAAGTGGAAGTTGATCATGAAGACAATGTCTCAGTGGAGGTGTCTGGTGGTGCAACCCTAGTTTCTCGAaatcaaagggaaagaaaggatgTGGAAGCCCCTCTATCTAAACCTGATCAGATCAAATATGATGTGAACACAAATGATGGAAAGAGTATTTTAGAGAAAGATAGTTTATTAACTCATGCAAATCCTTCCAGTGATGGGACTGCTACGCGGGGTCCTATGGCAGATGATGCATTGAAGGATGCAGACTTTCTTCCTCCCATTGTTTCTCTTGATGAGTTCATGGAATCTCATCATTCCAAGCCATTAGTTGAAAATTTAGTAGAACATGAAAAATTTACACCCAACTCAGAGAAGGACAATCCTGTGTTTGATTTGTCTTCAAGTATTGATCGTACTGCTGATGCCCCTGATAAATCTGACAAAGATCATACTACACGTCCTAGTTTGGATGCTGACCATGAAAAAAGGGTCAATGCGGAATCTGGGGCCATTTCAAGAGAAACAAGATGCAGTCAGAGTCATGCCGACATGAAGATAACTGATGCTCATCCTGAGGTAAGGTCAACTGCTGACAAGTCTGCGTCCAGTCATATTGAGTTGAAGGCGAGTCACTATCTTGCAGAAGACAAATTTGGCAGTAGCCAAATGCATTCCAAAAATGCAGCTTCTTCAAGTATATCAAAGGGTGAACACATTTGGGAGGGCATGCTTCAGCCAAATATTTCAACCACTCATTCTGTCATAAGCATATTTAAAAGTGGTGAGAAAACTTCCGTGATAGACTGGCCTGGATTTCTTGAAATCAAGGGAAGGGTTAGACTTGAGGCATTTGAGAAATTTCTGCAAGAGCTTCCAATGTCCAGAACTCGTGCTATCATGGTTTTGCACTTCGTTTCTAAGGAGGACCCCCACGAGAATGAGAAAGCAATCCTCCGTGAGGTAGCGGATTCATACATTTTGGACGAGAGAGTGGGATTCGCTGAGCCTGTTCCTGGAGTTGAACTTTACTTTTGCCCACCTCATAAAAAAACAGTTGAAATGCTCAGCAAGATACTTCCAATGGAACAAATTGAGGCAGTTAATGCTATTGATTTTGGTCTAATTGGTATTAATGTATGGAGAAAGACTCATTTAACTTCCACAATATCACCCACCTCATCTTCGCACCACAAACATAGCTTTAAAAAACAATACTCATCTACTAGGAGACAGCAAGAAACAAATATGAATACTAACGTCCCCAAGGCAGAGCCCTCTATGGGCCttccagatgatgatgatgttccTCCAGGGTTTGGGCCACCTGTGGCCCGAGACGAGGATGACCTACCGGAGTTCAATTTCTCCGGCCGGTCAAATCCCTCACACCTGGTCCAGAACCCTTTTATGCGACCAGTTATGCCCTCATTCCACACGGTTAATCCAACAACTTCTCGACCTGTGGATCAAATGAGGGAGCTTGTACATAAATATGGGCAAAGCGAAGAAAATGCTTCAAGAAACTTGCAGGATAAATTTGGGGCCACAATCCAGCCCTGGAATGACGATGACGACGATGATATACCTGAATGGCAGCCCCATACCCAAACTCCCCAGAATCAGTTTCTTCCCCAACAGTCAATCCCTAACTTTCAGCTTCGACCTCATATGGTGAATCAACCATATGGCATCTCACCCCACCAGTCCCATTCTTTTCAGCAGTCCCCAATGAATGTGACCCAAGGCCACCAAAATATTAGCCCTCTGTTGATTCCTCCTACACAGGGTAGTACCCTACAGCCGCCTCGCGGAGGGCACCCCTACGGTTCCCCTCCTGCACAGGGCACTGCCTGGCGTCAGAATGTTCCTAGAAGTAGgggtttttaa 3420 0.4342 MSNNLVSQQLPIPSMQMSQVEPTVSKVDSSGRDSQIGLIGSASSDSMSQQQGTSNNHIGLSRDVPGDPGSQGLAMSVMQSGQIDSHAISLGMHHLVAPNKRSMQMDMRLNSTGPQQLSTLPKRKAATEPLSSSSVTSNKRPAQMDRPWLQQVSNASPKGSQQIHPQSNSPRPQQLSGASGKRKTQMESTLSKAGTPRSSNSKSHNSHMQQSSRTQTESSGLVRSKMRESLAAALALVSQQDRHEDEKNNTLNGAGNAQGKLDNSSQCASAATDAPQVKTQVSETIDYASAVNDTSEDTTKDHPQTLACNEGYFEKCQDSAVESTNMLNFTPVTTCDKQDFQSSYTLTTDDVPFSDTFFVKDDLLQGNGLSWVLDSEMVDLSIQPEIQSNEDQRLESEEVGGACREQTVNSPELLASMIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMSGEIPPERLCSMTAEELASKELSQWRMAKAEEFAQMVVLPDSDGDFRRLVKKTHKGEFQVEVDHEDNVSVEVSGGATLVSRNQRERKDVEAPLSKPDQIKYDVNTNDGKSILEKDSLLTHANPSSDGTATRGPMADDALKDADFLPPIVSLDEFMESHHSKPLVENLVEHEKFTPNSEKDNPVFDLSSSIDRTADAPDKSDKDHTTRPSLDADHEKRVNAESGAISRETRCSQSHADMKITDAHPEVRSTADKSASSHIELKASHYLAEDKFGSSQMHSKNAASSSISKGEHIWEGMLQPNISTTHSVISIFKSGEKTSVIDWPGFLEIKGRVRLEAFEKFLQELPMSRTRAIMVLHFVSKEDPHENEKAILREVADSYILDERVGFAEPVPGVELYFCPPHKKTVEMLSKILPMEQIEAVNAIDFGLIGINVWRKTHLTSTISPTSSSHHKHSFKKQYSSTRRQQETNMNTNVPKAEPSMGLPDDDDVPPGFGPPVARDEDDLPEFNFSGRSNPSHLVQNPFMRPVMPSFHTVNPTTSRPVDQMRELVHKYGQSEENASRNLQDKFGATIQPWNDDDDDDIPEWQPHTQTPQNQFLPQQSIPNFQLRPHMVNQPYGISPHQSHSFQQSPMNVTQGHQNISPLLIPPTQGSTLQPPRGGHPYGSPPAQGTAWRQNVPRSRGF 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0789 1139 Gene3D - 387 477 IPR036575 GO:0006351
Sto5g0789 1139 MobiDBLite consensus disorder prediction 538 559 - -
Sto5g0789 1139 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 35 1113 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 1 74 - -
Sto5g0789 1139 Pfam Transcription factor S-II (TFIIS), central domain 395 489 IPR003618 GO:0006351
Sto5g0789 1139 MobiDBLite consensus disorder prediction 631 703 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 250 276 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 538 552 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 689 703 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 1 60 - -
Sto5g0789 1139 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 35 1113 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 1101 1139 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 111 223 - -
Sto5g0789 1139 ProSiteProfiles TFIIS central domain profile. 392 502 IPR003618 GO:0006351
Sto5g0789 1139 MobiDBLite consensus disorder prediction 238 276 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 572 595 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 649 680 - -
Sto5g0789 1139 MobiDBLite consensus disorder prediction 918 933 - -
Sto5g0789 1139 SMART mid_6 390 485 IPR003618 GO:0006351
Sto5g0789 1139 SUPERFAMILY Elongation factor TFIIS domain 2 408 478 IPR036575 GO:0006351
Sto5g0789 1139 MobiDBLite consensus disorder prediction 899 941 - -
Sto5g0789 1139 Pfam SPOC domain 742 871 IPR012921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0789 Sto-Chr5 5400352 5405511 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0789 - - gmx:100808809 1219.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0789 5 5400352 5405511 Sto5g0789 5 5400352 5405511 ECH