LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g0738	ATGGGAATTTCGAATCACACCTCCGCAGCTTATGTCATTCGAATTGCACCAGTAGGATCCATCACAGTTGATTTTGTACCATCCCTCATCTGGAGGCTGCCAACTCATTTGGTTCTTAGCACTTGGGTTCTGAAGAGAATTAACTCTCCTATCCATTGTGGTAGCCTCCTTATAGTTGTGGACCTCAGTACAAATCCTATTTACAAGACCAGAAGCATAAGTACTATGAGCATGACTCTATTGCAGAGAAGCTTGTTGTTCACCACGACGGCTTCTGCTCCTTCCTTCGCTGTCTCTTCTCCTCCTTCATCCGCTTCGCCCCTCCGTAGCTTCCGCTTCATGTTGCAATTCAGGGCACTTCAGAATTCTCCAAGACCACATTCAACATTGGGCTTTGGCAACAGTGTTAAATGCCAAAAGAGCTCCCGAATTAAGTTTGGAAAGCCTTTGGTGACAATCACAATCAATCGTACAAACATTGGGCAAAGCTTCTGTCCTTTCAATGGCACAAGTGATGGTTCTAGGTGTGCTGTTGTTACTGCATTTGCTAGATGTGGGTTCTGTAGGTCTTTGGCACCTCCGAATAATTTCTGTTTCCCATATATTGAGAAAGGCATTACAAGGAGTTTGACTAATGATGGGATTTTTCCTAAGAGATATTTCTCTAAAGCCCGGATAGTTGCAAATAAAAGTGATACTGTAAATACTCCAGATGGAAAGCATGGTAAGTCTACTTTTGGCTTCACAAGTTCTAATAAACACAAGAAGCGGGCAAAAGCTTTCATTGTTTATGGAAAAGATAGAGATGTAACTTCTAGTACTTCTGCATCTAAAGATGTAGATATGGTAGcatcaagaaaaaaattggaggaTAAGGGATTGGCAACATCTACACTGcatgttaacaataataaacagGACTCTAAACTTACtgtgagaaagaagaaaaagtcaGAAAGCAAGAACAGTAAGAATTCTTCCAGCAATTCATCAGAAGAGGCTGCTGGTGCACAAGGTTCTATAAATTCTTCTAAAGCAAGTACATCCAATATTAGTGATACTAACCAGAACTCCTCCGATATATTAAAGAAGAATTCAGCTAAGGTTGCATCAGAAGAATTACCAGATAAATCTGCACCTAAAAAGAACCTTTTAAAGAATCAAAGTGGGAATTCCAGTAAGAAAGGGAGATCTGTAAAAGCAGCGAATGAGTCAAAGCCGGAAGTGATAAGCAAAGTGAAAGTTCCAGAGATAATTACAGTCAAGCAGTTATATCCTCCCACTGGAAAGTCTGTGGTTATTGTGGAGTCTGTTACAAAGGCAAAGGTTATTCAAAGCTACCTTGGTAATATGTATGAAGTCTTGCCAAGCTATGGTCATGTAAGGGACTTGGCTGCAAGGTCCGGATCTGTGCGCCCAGATGATGATTTTAGTATGGTGTGGGAGGTTCCAGCTCCTGCCTGGACTCATCTTAAGAGCATCAAAGTTGCGCTGAGCGGAGCAGAAAATCTTATTCTTGCATCAGATCCTGACCGTGAGGGAGAGGCTATTGCTTGGCACATCATCGAGATGTTAGAACAACAGGATGCTCTACATGAAAATATATCTGTAGCAAGGGTTGTCTTTCATGAAATAACTGAGCAATCTATCAAAGGTGCTTTGCAGTCTCCTCGTACTATTGATGTGAATCTGGTACATTCTTACCTGGCACGGAGGGCTCTTGATTATTTGATTGGATTTAACATTTCACCATTACTATGGAGGAAGCTACCAGGTTGCCAATCAGCTGGAAGAGTTCAATCTGCTGCACTTTCTCTTATATGCGATAGGGAAATGGAAATTGATGAATTTAAACCACAGGAGTATTGGACCGTGGTAGCTCGGTTGAAAAATAAACAGCTGAAATCAAATGAAGAGCATACTTTTCTTGCTCACTTAACCCATTTCGATTTTAGAAAGttaaatcaattttcaattaGTTCTGATAAAGAGGCAGCGGATgttgaaaacaaaataatatcagCAGAATTTCAGGTTACTAACGTGAGCAGAAACAAAATTCGAAGAAACCCTCCAACACCTTATATTACATCGACTCTTCAGCAAGATGCTGCAAACAAGTTGCATTTCTCAGCAAGTAACACGATGAGGCTTGCTCAGAAACTTTACGAGGGAGTTGAACTTTCTGATGGTAAAGCAGTGGGTTTGATAACGTACACCAGAACCGATGGACTGCATGTAGCTATATCTGACATACGCTCACTGATCATTGAAAGGTATGGTCAAAATTTTGCCTCACAGACTCCACGGAAGTATTTTAAAAAGGTGAAAAATGCCCAAGAGGCTCATGAAGCCATTAGACCGACTGACATACGCAGATTACcatCAATGCTTGTTGGGGTGCTAGAGGAAGAATCCATGAAGTTATACACACTTATTTGGTCACGAACGGTTGCATGTCAGATGGAACCTGCTACCTTTGAGCAGATACAACTTGACATTGGAAATGCTGATGAGTCTATTATGTTCCGATCAGCAAGCTCGAGGATTGATTTTCCTGGGTACCAGGCAGTATTTAAGGCTGAAAGGGTTCAAGATAAGGAAAATAATGGATCAGACCGTGATGAAACTTTTGGGGTTCTCAATGCTTTAAAGgcAAGGGATCCATTACATCTTGTTCAAACAGAACTTGAGCAGCACCATACACAACCCCCGCCACGTTACTCTGAAGCGTCATTGGTTAAGAAGCTTGAAGAGCTTGGGATTGGGAGACCTTCGACATATGCATCTACATTGAAAGTTTTAAAGGACAGAAACTATGTCACAGTAAAAAGCCGTGTTCTATATCCGGAATTTCGCGGTCGAATGGTTTCGGCTTTTCTGGGTCATCATTTTTCCGAGGTCACAGACTACAGTTTCACTGCTGACATGGAGACTGAGCTTGATAATGTTTCTGCTGGGTTTACTGAATGGAAAGGGCTCCTTAGAGATTATTGGACACGGTTCAAATCATATTGTGATCGAACTAACAATGTTCATATTCACCAGGTGGAGAAAATGTTGGAAAAGAAATTTGGGCATCATTTATTTTCTTGCCTCCCAGATCAGAGCAGGACATGCCCTAGTTGTATGGAAGGCACCTTGATTTTCAAAGTAAGTAGGTTTGGCTCTGGCTACTTTATAGGTTGTGATCAACATCCGAGGTATATTGCTAAAACATTATATGGTGAAGAGGATGAAGAAGTCACAGATCAAAATAGCAAAATAACAGAGGAGCCAAAAATCCTAGGTGTTAATCCTGGATCAAATGAAAAGGTTCTTTTGAAGACTGGTCCTTATGGAAATTATGTTCAGCTTGGAGAAGACAAGAAGGGATACATACCTAAAAGGGCCTCTGTCTCTCATGGTTTTATTAGTGGCTTAGAAGAATGGAATTATAGTGTTCTTGGTATAGATGaggtcatgactcatgaggGTGAAAAGAACACATACTTGGTATCAGGTGATGATGGCTTGTATGGTTCTTTTCAGATAAAGGATGCGAACTCTGTTACTTTAGAAGATGCGCTTGAGTTGCTGCGATACCCATTGACCTTGGGTAAGCATCCCAAGGATGGACAGCCAGTCATATTGAGGCTTTCGAAGGTTGGGTTTTCTGTTAGACATCGGCGCACAAATGCTTCTGTTCCAAAGAATGTGAAGCCGAATGATGTCACACTAGAAAAAGCATTAGAATATTTGTCAAGTAATGATGTGAGACAAAGTGGTCGTCCGAAAAGCAAACCTAAGGTTGAGGAAGCTGTCGAAGCTTTCTAA	3816	0.4004	MGISNHTSAAYVIRIAPVGSITVDFVPSLIWRLPTHLVLSTWVLKRINSPIHCGSLLIVVDLSTNPIYKTRSISTMSMTLLQRSLLFTTTASAPSFAVSSPPSSASPLRSFRFMLQFRALQNSPRPHSTLGFGNSVKCQKSSRIKFGKPLVTITINRTNIGQSFCPFNGTSDGSRCAVVTAFARCGFCRSLAPPNNFCFPYIEKGITRSLTNDGIFPKRYFSKARIVANKSDTVNTPDGKHGKSTFGFTSSNKHKKRAKAFIVYGKDRDVTSSTSASKDVDMVASRKKLEDKGLATSTLHVNNNKQDSKLTVRKKKKSESKNSKNSSSNSSEEAAGAQGSINSSKASTSNISDTNQNSSDILKKNSAKVASEELPDKSAPKKNLLKNQSGNSSKKGRSVKAANESKPEVISKVKVPEIITVKQLYPPTGKSVVIVESVTKAKVIQSYLGNMYEVLPSYGHVRDLAARSGSVRPDDDFSMVWEVPAPAWTHLKSIKVALSGAENLILASDPDREGEAIAWHIIEMLEQQDALHENISVARVVFHEITEQSIKGALQSPRTIDVNLVHSYLARRALDYLIGFNISPLLWRKLPGCQSAGRVQSAALSLICDREMEIDEFKPQEYWTVVARLKNKQLKSNEEHTFLAHLTHFDFRKLNQFSISSDKEAADVENKIISAEFQVTNVSRNKIRRNPPTPYITSTLQQDAANKLHFSASNTMRLAQKLYEGVELSDGKAVGLITYTRTDGLHVAISDIRSLIIERYGQNFASQTPRKYFKKVKNAQEAHEAIRPTDIRRLPSMLVGVLEEESMKLYTLIWSRTVACQMEPATFEQIQLDIGNADESIMFRSASSRIDFPGYQAVFKAERVQDKENNGSDRDETFGVLNALKARDPLHLVQTELEQHHTQPPPRYSEASLVKKLEELGIGRPSTYASTLKVLKDRNYVTVKSRVLYPEFRGRMVSAFLGHHFSEVTDYSFTADMETELDNVSAGFTEWKGLLRDYWTRFKSYCDRTNNVHIHQVEKMLEKKFGHHLFSCLPDQSRTCPSCMEGTLIFKVSRFGSGYFIGCDQHPRYIAKTLYGEEDEEVTDQNSKITEEPKILGVNPGSNEKVLLKTGPYGNYVQLGEDKKGYIPKRASVSHGFISGLEEWNYSVLGIDEVMTHEGEKNTYLVSGDDGLYGSFQIKDANSVTLEDALELLRYPLTLGKHPKDGQPVILRLSKVGFSVRHRRTNASVPKNVKPNDVTLEKALEYLSSNDVRQSGRPKSKPKVEEAVEAF	1271

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sto5g0738	1271	PRINTS	Prokaryotic DNA topoisomerase I signature	504	517	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Sto5g0738	1271	PRINTS	Prokaryotic DNA topoisomerase I signature	594	612	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Sto5g0738	1271	PRINTS	Prokaryotic DNA topoisomerase I signature	734	743	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Sto5g0738	1271	PRINTS	Prokaryotic DNA topoisomerase I signature	809	825	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Sto5g0738	1271	PRINTS	Prokaryotic DNA topoisomerase I signature	921	935	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Sto5g0738	1271	Gene3D	Topoisomerase I, domain 3	616	905	IPR013825	-
Sto5g0738	1271	MobiDBLite	consensus disorder prediction	382	398	-	-
Sto5g0738	1271	ProSitePatterns	Prokaryotic DNA topoisomerase I active site.	720	743	IPR023406	GO:0003917
Sto5g0738	1271	MobiDBLite	consensus disorder prediction	1256	1271	-	-
Sto5g0738	1271	Pfam	Toprim domain	432	545	IPR006171	-
Sto5g0738	1271	MobiDBLite	consensus disorder prediction	323	365	-	-
Sto5g0738	1271	CDD	TOPRIM_TopoIA_TopoI	430	557	IPR034149	-
Sto5g0738	1271	MobiDBLite	consensus disorder prediction	232	249	-	-
Sto5g0738	1271	MobiDBLite	consensus disorder prediction	232	251	-	-
Sto5g0738	1271	PANTHER	DNA TOPOISOMERASE, TYPE IA, CORE	235	1135	IPR000380	GO:0003677\|GO:0003917\|GO:0006265
Sto5g0738	1271	PANTHER	DNA TOPOISOMERASE, TYPE IA, CORE	1177	1264	IPR000380	GO:0003677\|GO:0003917\|GO:0006265
Sto5g0738	1271	TIGRFAM	topA_bact: DNA topoisomerase I	433	1068	IPR005733	GO:0003677\|GO:0003917\|GO:0006265
Sto5g0738	1271	Hamap	DNA topoisomerase 1 [topA].	430	1120	IPR028612	GO:0003677\|GO:0003916\|GO:0006265
Sto5g0738	1271	SMART	topIaneu2	683	958	IPR003602	GO:0003677\|GO:0003916\|GO:0006265
Sto5g0738	1271	Gene3D	Topoisomerase I, domain 2	570	999	IPR013824	-
Sto5g0738	1271	MobiDBLite	consensus disorder prediction	366	380	-	-
Sto5g0738	1271	SMART	toprim5	430	530	IPR006171	-
Sto5g0738	1271	Pfam	Topoisomerase C-terminal repeat	1202	1250	IPR025589	-
Sto5g0738	1271	SUPERFAMILY	Prokaryotic type I DNA topoisomerase	430	1047	IPR023405	-
Sto5g0738	1271	Pfam	DNA topoisomerase	560	994	IPR013497	GO:0003677\|GO:0003916\|GO:0006265
Sto5g0738	1271	Gene3D	-	427	566	-	-
Sto5g0738	1271	SMART	topIban2	536	624	IPR003601	GO:0003677\|GO:0003916\|GO:0006265
Sto5g0738	1271	Gene3D	Topoisomerase I, domain 4	691	824	IPR013826	-
Sto5g0738	1271	MobiDBLite	consensus disorder prediction	294	407	-	-
Sto5g0738	1271	MobiDBLite	consensus disorder prediction	1249	1271	-	-
Sto5g0738	1271	PANTHER	BNAA01G05990D PROTEIN	1177	1264	-	-
Sto5g0738	1271	PANTHER	BNAA01G05990D PROTEIN	235	1135	-	-
Sto5g0738	1271	ProSiteProfiles	Toprim domain profile.	430	545	IPR006171	-
Sto5g0738	1271	CDD	TOP1Ac	563	1005	IPR013497	GO:0003677\|GO:0003916\|GO:0006265

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g0738	Sto-Chr5	4977838	4996965	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g0738	-		-	qsu:112032357	1371.68

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g0738	5	4977838	4996965	Sto5g0738	5	4977838	4996965	ECH