Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0696 ATGGCGACGCCGTCATTGGACGAAGAAACTGCTAAGAACGTCATACGACAAGTTGAGTTCTACTTCAGCGATAGCAACCTTCCTAGGGACAGTTTTCTCAAGAAATCTATCAGTGAAAGTGAAGATGGCTTGGTTAGTTTGGCTTTGATTTGTTCTTTTACTCGGATGAGAAAACATCTTAATCTGGACGATGTAAAGCCCAATGAAGTTCCCGAAGATACTGTTAAAGCTGTTGCTGAAACTTTGAAAAAATCGACTTCACTCAAGATCTCTGAAGACGGAAAAAAGGTTGGCAGAGCATCTGAACTTCTGAAGCCAGAAGAGGTAATTGAACAAGTGGACGTAAGAACAATCGCTGCGTCACCATTTGAATATGATGCGAAGCGTGAAGATTTAGAGGCATTCTTTGGTCAATTTGCCAAGgTTAATAGTGTGAGGCTTCCTCGTCATGTTGGAGACAAGAAGTTCTTCTGTGGCACTGCCCTTGTTGAGTTTTCATCAGAACAAGATATTGAAAAAGTTTTGGGGCAAAAATTGGTCTATGCAGGGGCTGAGTTAGAATTGAAGCCAAAGAAGGATTTTGAtgcagagagagaaaaagagttAGAGGAGCATGAAAAATCTGCTGCACATATGGGTTCAAATCGCCAAAATAACTCAAATGCAGAACCAGaCTACCCTAAGGGCTTAATTATTTCCTTCAAGCTAAAAAGCAGTTCAGATGAAGTTGATCAGGGTCAAAATGGTGATCATCAAGAATCCAATGACAATAATGGTGTCTCCAAGACAGATGAACAGAAGCCCTCAGGAAGTGCTGCTGCAGTTAATGAACAAAAGGTATCAGATGAAACTGACAATGATAAAGAAAACCAAAAGGTACCAGATGAAACTGACAATGAAAACCAAAAGGTATCAGATGAAACTGACAATgatcaagaaaatcagaagGTATCAGATGAAACTGACAATGATAGAGAAAACCAAGGGGTCTGTGAAGGAAAGGAAGCTGATGGTGAGGAAAAGAATAATGAAGCTGATTTAAAAAAGTCAGCTGCTACTTATAAGGACAACATGGACGTGGTCATGCGTGAGGATTTAAAAGGTGTCTTTGAGAAGTTTGGCTCTGTGAAGTTCATTGATTTCAAGATTGGAGCAGAATCAGGATACATTCGGTTTGAAGAACCTGAAGCTGCTCAGAAAGCTCGTGCTGCTGCAGTTCTTGCTGAAAAGGGGGGTTTGGCTGTGAAGAATTACATTGCTATTCTTGATCCAGTGTCTGGTGAGGCCGAAAGGGAATACTGGAGCCTTCTCCGCGGTAATCAAGAGAAGCGCCGCGACAATTTTAAGGGGAGTGGCAGAGGAAGGGGAGGAAAATTTGGGAGAGGAGGAAAACATCCCCGCTCGAGAGACAATGAATATCGCCCTAGTAAAGCTCAGAGAGTCTGA 1446 0.4094 MATPSLDEETAKNVIRQVEFYFSDSNLPRDSFLKKSISESEDGLVSLALICSFTRMRKHLNLDDVKPNEVPEDTVKAVAETLKKSTSLKISEDGKKVGRASELLKPEEVIEQVDVRTIAASPFEYDAKREDLEAFFGQFAKVNSVRLPRHVGDKKFFCGTALVEFSSEQDIEKVLGQKLVYAGAELELKPKKDFDAEREKELEEHEKSAAHMGSNRQNNSNAEPDYPKGLIISFKLKSSSDEVDQGQNGDHQESNDNNGVSKTDEQKPSGSAAAVNEQKVSDETDNDKENQKVPDETDNENQKVSDETDNDQENQKVSDETDNDRENQGVCEGKEADGEEKNNEADLKKSAATYKDNMDVVMREDLKGVFEKFGSVKFIDFKIGAESGYIRFEEPEAAQKARAAAVLAEKGGLAVKNYIAILDPVSGEAEREYWSLLRGNQEKRRDNFKGSGRGRGGKFGRGGKHPRSRDNEYRPSKAQRV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0696 481 MobiDBLite consensus disorder prediction 250 279 - -
Sto5g0696 481 Gene3D - 106 200 IPR012677 -
Sto5g0696 481 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Sto5g0696 481 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Sto5g0696 481 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Sto5g0696 481 Gene3D - 2 103 IPR036388 -
Sto5g0696 481 ProSiteProfiles xRRM domain profile. 338 464 IPR014886 GO:0003723
Sto5g0696 481 SUPERFAMILY "Winged helix" DNA-binding domain 7 101 IPR036390 -
Sto5g0696 481 CDD LA_like_plant 10 99 - -
Sto5g0696 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Sto5g0696 481 MobiDBLite consensus disorder prediction 280 348 - -
Sto5g0696 481 MobiDBLite consensus disorder prediction 192 211 - -
Sto5g0696 481 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Sto5g0696 481 PANTHER LUPUS LA PROTEIN-RELATED 4 480 IPR045180 -
Sto5g0696 481 SUPERFAMILY RNA-binding domain, RBD 363 450 IPR035979 GO:0003676
Sto5g0696 481 Pfam RNA binding motif 361 453 IPR014886 GO:0003723
Sto5g0696 481 Pfam La domain 14 83 IPR006630 -
Sto5g0696 481 MobiDBLite consensus disorder prediction 192 348 - -
Sto5g0696 481 MobiDBLite consensus disorder prediction 444 481 - -
Sto5g0696 481 SMART la 8 100 IPR006630 -
Sto5g0696 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 193 IPR000504 GO:0003723
Sto5g0696 481 PANTHER OS02G0610400 PROTEIN 4 480 - -
Sto5g0696 481 SUPERFAMILY RNA-binding domain, RBD 107 192 IPR035979 GO:0003676
Sto5g0696 481 SMART rrm1_1 357 416 IPR000504 GO:0003723
Sto5g0696 481 SMART rrm1_1 117 189 IPR000504 GO:0003723
Sto5g0696 481 Gene3D - 335 453 IPR012677 -
Sto5g0696 481 MobiDBLite consensus disorder prediction 463 481 - -
Sto5g0696 481 CDD RRM1_La 117 189 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0696 K11090 - gmx:100803099 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0696 5 4724010 4727485 Sto5g0696 5 4724010 4727485 ECH