Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0662 ATGGGTCGCGCGGTTCTTTCTCATTTTCTGGCGCTCTCATGTTCTTCTCCTCGCTTCGCCCCTTCACTGTCTTGTACTGGGCCAAGGTTCTCGAAGGCACCTCCCGCGAATCTTTTTCGTTCTCGCCATCCGATCAGCCTCAGCCTCAGTGGCGCTGGCGTCCGGTGTTGTTCTACTAGTGAGTCTGTTTCAAAGACTTCTCCGACCTCTGTAAAGAAACGGGTTGTGTCAGGAGTTCAACCCACAGGATCTGTTCACCTTGGGAATTATCTTGGTGCTATAAAGAATTGGATTGGACTTCAGGATACATATGATACACTTTACTTCATCGTAGACTTGCATGCGATTACATTACCATATGACGTACAAGAATTATCCAGGGCAACAAGAGATACGGCAGCCATTTATCTGGCTTGTGGTGTTGATACTTCAAAGGCATCTGTTTTTGTACAATCCCATGTTCGTGCACATGTAGAATTGATGTGGTTGCTGAGCTCTGCCACACCAATTGGTTGGCTGTACAGAATGATTCAGTTTAAAGAGAAATCCCGCAAGGCGGGTGATGAGAATGTTGGAGTGGCTCTTTTGACTTATCCTGTTCTTATGGCTTCAGATATTCTTCTATATCAGTCAGACTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTAGAGTTGACTCGTGAATTAGCTGAACgggttaattatttatatggaGGAAGGAAGTGGAAGAAGTTAGGCGGCCGAGGTGGTGCCATATTTAAGGTTCCAGAGCCCCTTATACCTCCAACTGGAGCCCGAATCATGTCACTAACTGATGGTCTTTCCAAgATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATCTTCTCGATCCAAAAGATCTCATAGCAAACAAGATAAAACGTTGCAAAACTGATGCATTTCCTGGCTTAGAATTTGACAATCCTGAAAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTCATAGCAGGCAAGACAAAAGAGGAAGTTGTGCAAGAATGCCACAATATGAACTGGGGCACATTCAAAGCTCTTTTAACAGATGCCTTGATCGATCATCTACATCCCATTCAGGTTCGATACGAGGAAATCATGTCTGAATCAGGTTATTTAGATGAAGTTCTGGCAGAAGGTGCCAGAAAAGCTTCTGAGGTAGCAGATGCTACACTCCATAATGTTTACCAGGCAATGGGATTTTTGAAGAGACGATCATAA 1248 0.4351 MGRAVLSHFLALSCSSPRFAPSLSCTGPRFSKAPPANLFRSRHPISLSLSGAGVRCCSTSESVSKTSPTSVKKRVVSGVQPTGSVHLGNYLGAIKNWIGLQDTYDTLYFIVDLHAITLPYDVQELSRATRDTAAIYLACGVDTSKASVFVQSHVRAHVELMWLLSSATPIGWLYRMIQFKEKSRKAGDENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPTGARIMSLTDGLSKMSKSAPSDQSRINLLDPKDLIANKIKRCKTDAFPGLEFDNPERPECNNLLSIYQLIAGKTKEEVVQECHNMNWGTFKALLTDALIDHLHPIQVRYEEIMSESGYLDEVLAEGARKASEVADATLHNVYQAMGFLKRRS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0662 415 CDD TrpRS_core 74 362 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Sto5g0662 415 Gene3D - 270 380 - -
Sto5g0662 415 PRINTS Tryptophanyl-tRNA synthetase signature 85 101 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Sto5g0662 415 PRINTS Tryptophanyl-tRNA synthetase signature 135 154 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Sto5g0662 415 PRINTS Tryptophanyl-tRNA synthetase signature 212 233 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Sto5g0662 415 PRINTS Tryptophanyl-tRNA synthetase signature 277 287 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Sto5g0662 415 Hamap Tryptophan--tRNA ligase [trpS]. 72 411 IPR024109 GO:0004830
Sto5g0662 415 TIGRFAM trpS: tryptophan--tRNA ligase 72 410 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Sto5g0662 415 PANTHER BNAA04G15180D PROTEIN 35 410 - -
Sto5g0662 415 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 35 410 - -
Sto5g0662 415 Gene3D HUPs 75 409 IPR014729 -
Sto5g0662 415 Pfam tRNA synthetases class I (W and Y) 73 365 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Sto5g0662 415 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 81 90 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Sto5g0662 415 SUPERFAMILY Nucleotidylyl transferase 73 410 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0662 K01867 - csv:101219148 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0662 5 4466966 4474089 Sto5g0662 5 4466966 4474089 ECH