Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0656 ATGCGTCACCTGTATCAAATCCAGGCCCAACTCGTCACCTTTCCTGTACCTCCCGATTCTAAATCAGTTAACCCTAACAAAATCGCCGTTAAGCTCATAGGGGTGTGCGGCGCCCGCGCTAATACTCACCACGCTGCACTTTTCTTCGGTCATTTCCTTACAAACCCAAATATCGTCGCTTACAATGCGCTTCTCAAAGCATATGCTCAGAACAATGAGTGGCAGTGTACTATATATCACTTCAACAAGCAATTGGTAACACGTGACGCTCCAAGCCCGGATGAGTACACTTTTACTTCCGTCCTCAAGGCCTGCGCTGGACTTTCCCTGGCGGTCGAAGGTGAAAAGCTTCATTGCTTTGTTACTAAATATGGATGCGAAGCAAACCTTTTTGTCTGTAACTCGCTTATGGATTTGTATTTTAAAGTGGGTCAGTTTGGGGTTGctcacaagttgtttgataaaaTGCTTGTAAGAGATGTGGTATCTTGGAACACTCTCCTTTCTGGATATTGTTTAGGTGGAAATCTGGATAAGGCAAGATGGATTTTCGATGGGATGGTTGAGAAAAGCACGGTTTCCTGGTCGACGATGATTAATGGGTACGCGAAAGTGGGTGAGTTATATGAAGCACGCCAGCTTTTTGACAAAATGCCAGAGAGGAATGTGGTTTCGTGGAATGCGATGATTGCTGGTTATGCCCAAAATGAGAGGTATGCTGATGCTATAGAGCTATTTCGCCAAATGCAACAACAAAGCAGTATGGTGCCCAATGATGCTACACTCGTTAGCGTATTGTCTGCTTGTGCACAGCTTGGTGCACTTGATTTAGGGAAGTGGATTCATGATAGATTTATAAGACGAAGTAAGATGAAGCTGCGTCTGTTTTTAGGGAATTCACTGGCTGATATGTATGCAAAATGTGGATGCATAGTGGATGCCAGGCAGGTTTTTAATTCAATGCAGGAAAAAGACGTGATCTCTTGGACCATTCTTATCACTGGTTTGGCAATGCATGGTCATGCAAATGAAGCTTTTGGGTGCTTCAGAGAAATGCTTGAACATGGTATTAGGCCAAATGATATAACTTTCATGGGGCTATTAACAGCATGCACTCATGCTGGATTGGTCGATAAGGGGCTGGAGTATTTTCACATGATGGACCAAGTGTATGGAATTTCTCCAAAGATTGAACACTATGGTGTATACAAAGACACAGAGAGAGGCATACGTGTAGCACAACACATTCTTGAACTGGATCCTGACCACTCTGGGAGCTATGTCTATCTTACTAATATATATGCTTCAAAGGGAAGGCTAGACGATGCTGCAAAATGTAGATTGAGAATGAGAGATAACGGAGTAATGAAGATACCTGGGTGTAGTTGGATAGAGGTGGATAACACAGTTCATGAGTTCTTCATGGGAGATCTCTCTCATCCTCAGtcagagaaaatatatttaatgatTAGAGAATTGAGATGGAAAATGAAGCTAGCTGGGTACAAGCCCAAGACAGATCTTGTAGTACATaatgtggaagaagaagaaaaagaagatgctTTATCCAGTCACAGTGAAAAGTTGGCATTAGCATTTGGTTTGATCAGTACTAGTGAAGGAACTACAATTAGAATAGTGAAGAACCTGCGTGTTTGTGATGACTGCCATGATGCTATAAAGATAATCTCTCTACTTGTTCGAAGAGAGATTATTGTGAGAGACCGTAGTCGATTCCACCATTTCAGAGATGGAACATGCTCTTGCAATGATTTTtggtaa 1782 0.4097 MRHLYQIQAQLVTFPVPPDSKSVNPNKIAVKLIGVCGARANTHHAALFFGHFLTNPNIVAYNALLKAYAQNNEWQCTIYHFNKQLVTRDAPSPDEYTFTSVLKACAGLSLAVEGEKLHCFVTKYGCEANLFVCNSLMDLYFKVGQFGVAHKLFDKMLVRDVVSWNTLLSGYCLGGNLDKARWIFDGMVEKSTVSWSTMINGYAKVGELYEARQLFDKMPERNVVSWNAMIAGYAQNERYADAIELFRQMQQQSSMVPNDATLVSVLSACAQLGALDLGKWIHDRFIRRSKMKLRLFLGNSLADMYAKCGCIVDARQVFNSMQEKDVISWTILITGLAMHGHANEAFGCFREMLEHGIRPNDITFMGLLTACTHAGLVDKGLEYFHMMDQVYGISPKIEHYGVYKDTERGIRVAQHILELDPDHSGSYVYLTNIYASKGRLDDAAKCRLRMRDNGVMKIPGCSWIEVDNTVHEFFMGDLSHPQSEKIYLMIRELRWKMKLAGYKPKTDLVVHNVEEEEKEDALSSHSEKLALAFGLISTSEGTTIRIVKNLRVCDDCHDAIKIISLLVRREIIVRDRSRFHHFRDGTCSCNDFW 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0656 593 Pfam PPR repeat 191 218 IPR002885 -
Sto5g0656 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 190 IPR002885 -
Sto5g0656 593 Pfam DYW family of nucleic acid deaminases 501 593 IPR032867 GO:0008270
Sto5g0656 593 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 402 566 - -
Sto5g0656 593 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 401 - -
Sto5g0656 593 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN 402 566 - -
Sto5g0656 593 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN 1 401 - -
Sto5g0656 593 Gene3D Tetratricopeptide repeat domain 117 190 IPR011990 GO:0005515
Sto5g0656 593 Gene3D Tetratricopeptide repeat domain 191 274 IPR011990 GO:0005515
Sto5g0656 593 Gene3D Tetratricopeptide repeat domain 21 116 IPR011990 GO:0005515
Sto5g0656 593 Pfam PPR repeat 132 160 IPR002885 -
Sto5g0656 593 Pfam PPR repeat 162 190 IPR002885 -
Sto5g0656 593 Gene3D Tetratricopeptide repeat domain 275 406 IPR011990 GO:0005515
Sto5g0656 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 159 IPR002885 -
Sto5g0656 593 SUPERFAMILY TPR-like 202 446 IPR011990 GO:0005515
Sto5g0656 593 Pfam PPR repeat family 324 371 IPR002885 -
Sto5g0656 593 Pfam PPR repeat family 221 270 IPR002885 -
Sto5g0656 593 SUPERFAMILY HCP-like 61 252 - -
Sto5g0656 593 Pfam E motif 403 465 IPR046848 -
Sto5g0656 593 TIGRFAM PPR: pentatricopeptide repeat domain 162 190 IPR002885 -
Sto5g0656 593 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Sto5g0656 593 TIGRFAM PPR: pentatricopeptide repeat domain 363 395 IPR002885 -
Sto5g0656 593 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Sto5g0656 593 TIGRFAM PPR: pentatricopeptide repeat domain 193 224 IPR002885 -
Sto5g0656 593 TIGRFAM PPR: pentatricopeptide repeat domain 132 161 IPR002885 -
Sto5g0656 593 TIGRFAM PPR: pentatricopeptide repeat domain 299 326 IPR002885 -
Sto5g0656 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Sto5g0656 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0656 Sto-Chr5 4430105 4432003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0656 94 593 Glycoside Hydrolase AT3G49170 34.583 3.85e-111 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0656 - - zju:107420873 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0656 5 4430105 4432003 Sto5g0656 5 4430105 4432003 ECH