Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0617 CTGGTTTCCTCTGAGTTAAAAGAACGCAACTACATGGGATTATCCGAATCATCTTCTTCGGTGGACAGCTCGGTGGTTCTGTCGTCCTTCTCGGATGAGAGTAAAAGTAATCTGAACCTGAAAGCCACAGAGCTCAGGCTCGGCCTTCCGGGATCTCAGTCCCCGGAACGAAACTCTGATCTTTGCTTGAGAAGCTCGGCTCAATTTAATGAGAAACCGTTGTTTCCTTTGCGCCCTTTAACCGATGATCACCATTCCTCCACCAAGACTGCTGTTTTGGGTAGCAAAAGGGGGTTCTCAGATGCCATGAATGGCTTCTCAGAGGCGAAATTCCTGGCTAATTCGGAGGTCAATACTGTACTGTCCCCCAGGCCTACTCATAACATGGGATTGAAAACTAGTTCGATGCTTGAAAATCTCGGCACTCAGGCTCAGCAAGCCAAAGCGAAAGAAGTAGGGCCGACAAAGGCCGCACTCGAGAGGCCTCATACTGTTGATGAAACCACACCAAATCTTGAAGCTTCTGCGAATAATAATAGCAATGCACCAGCTACCAAAGCACAGGTGGTGGGTTGGCCTCCTATTAGATCATTTAGGAAGAACTCATTGGCTACTACTTCAAAGAACACCgaagaagtagatggaaaagcgGGTTCCGGTGCTCTGTTCATCAAAGTGAGTATGGATGGTGCTCCATATTTGAGGAAAGTAGATTTGAAGAACTACTCTGCATATCCAGAACTATCTTCTGCTCTGGAAAAGATGTTCAGCTGTTTTACCATTGTTTGCCTGGATCCAGTTACTGCTTGCTTCGTCGTGATTTCAGGTCAATGTGGATCTCATGGAACTCTTGGAAGGGAAATTCTCAATGAAAGCAAGCTGAAGGATCTGCTTCACGGCTCAGAATATGTTCTAACTTACGAGGACAAAGATGGCGACTGGATGCTAGTGGGCGATGTTCCATGGGAGATGTTCATTGACACATGCCGGAGGCTGAGGATCATGAAGAGTTCCGATGCCATTGGTCTAGCACCGAGGGCTGTGGAAAAAAGCAAGAGTAGGAACTAG 1068 0.4616 LVSSELKERNYMGLSESSSSVDSSVVLSSFSDESKSNLNLKATELRLGLPGSQSPERNSDLCLRSSAQFNEKPLFPLRPLTDDHHSSTKTAVLGSKRGFSDAMNGFSEAKFLANSEVNTVLSPRPTHNMGLKTSSMLENLGTQAQQAKAKEVGPTKAALERPHTVDETTPNLEASANNNSNAPATKAQVVGWPPIRSFRKNSLATTSKNTEEVDGKAGSGALFIKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIVCLDPVTACFVVISGQCGSHGTLGREILNESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLRIMKSSDAIGLAPRAVEKSKSRN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0617 355 SUPERFAMILY CAD & PB1 domains 219 336 - -
Sto5g0617 355 ProSiteProfiles PB1 domain profile. 221 337 IPR000270 GO:0005515
Sto5g0617 355 Pfam AUX/IAA family 43 346 IPR033389 -
Sto5g0617 355 Gene3D - 216 349 - -
Sto5g0617 355 MobiDBLite consensus disorder prediction 1 23 - -
Sto5g0617 355 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 349 IPR003311 GO:0005634|GO:0006355
Sto5g0617 355 PANTHER AUXIN-INDUCED PROTEIN 4 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0617 Sto-Chr5 4070057 4072265 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sto5g0617 AUX_IAA 4.9e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0617 K14484 - gmx:100815447 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0617 5 4070057 4072265 Sto5g0617 5 4070057 4072265 ECH