Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0587 ATGCACACCAACGAAGAAGGTGTTTCAAATTGTTATGTGTTCAAGAGTCGATTACAAGAGTATGCTCAGAAGGTGGGATTTCCCACACCTGTCTATGAAACTATCAAGGAAGGACCTTCTCATGAACCTTCTTTCAGGTCAACAGTGATAGTGAATGATATAAGATATGATTCTTTGCCTGGATTTTTCAATCGTAAAGCAGCAGAGCAGTCAGCTGCTGAAGTTGCTCTAGTGGAGTTGGCTAAATCTGGTCAAGTTAATCAATCCATCAACCAGCCTGTTCATGAAACAGGATTATGCAAGAATTTACTTCAGGAGTACGCACAGAAGATGAATTATGCAATTCCCTTGTATCTGTGCAAAAAGGATGAAAGACCAGGGCGATTATCATTATATTCATGTACAGTTGAAATTGGGGGGATCCGGTATATCGGGGCATCAGCAAGAACGAAGAAAGAAGCAGAGATTAAAGCTGCTAGAACTGCTTTATTAGCTATTCAGTCAAGTGCATCCCAAGCTTCCGAAAAGCAGTCTGACCACTCGAAATTCACAGTCATTCCATGCAAAAAAAGGGGAGCAGAATCAGTTGCCAAGGCTGAGGCTTCGAAAGTCCTAAAGGCTAAGAAAGCAcgatttaaaagaagaaaaccaAAATGTAGACAATACAGAGACAAGAAGGGCCGTAATAGTCTTGAAAACACTGTTCGTATGGGAGCAAATATGAATCATGAGGTAGAGTCACatgcaaaaataaattatgagcCTTGTATCCAGACCGTGGAACCTAGACCAGTGGCTACAGAAGGCATGAAAAAAGTTGATGATGGAATGTCAGTTGATTATCAAAATGAACAGAGTATGTTGGCTAGGGAATGCTCTTTTTCTCCAAATAGCAGTAAGATTTTTGAAAACGGAAAGTCAACAGAATTGCAATCGAACGAGTCTTGTGTTCCGACCATGGAATCTAGACCATTGGCTGAAGAAGCCATGAAAAAATTTGGTGATGGAATGTCAGTTGATTACCCAAATGAAAAGGGTACATTGACTGGCGAAGGTTCTTTGTTTCTGAGTAGTAGCAGTAAGAGTTTTGCAAACGGAAAGTCAACAGAATTGCACTCCAATGAGTCTTGTGTCCAGGCCGCAGAATCTAGATCTTTTGAAAATGGTATGCCAGCTGACTATCAAAATGAAAAGGGTACGTTGGCTAGGGAAGGTTCTTTATCTCTGAATAGCAATAAGATTTTTGAAAACGGAACGTCATTGCAAACCAACGAGTCTTGTGTCAAGGCCATGGATTCTGGACCATTGGATGCAGAAGCCATGAAAATTTATGACGATGGAATGCCGGTTCACTACTCGGATGAAAAAGGTACGTTGGCTGGGGAAAGTTGTTGTCTCTGA 1401 0.4026 MHTNEEGVSNCYVFKSRLQEYAQKVGFPTPVYETIKEGPSHEPSFRSTVIVNDIRYDSLPGFFNRKAAEQSAAEVALVELAKSGQVNQSINQPVHETGLCKNLLQEYAQKMNYAIPLYLCKKDERPGRLSLYSCTVEIGGIRYIGASARTKKEAEIKAARTALLAIQSSASQASEKQSDHSKFTVIPCKKRGAESVAKAEASKVLKAKKARFKRRKPKCRQYRDKKGRNSLENTVRMGANMNHEVESHAKINYEPCIQTVEPRPVATEGMKKVDDGMSVDYQNEQSMLARECSFSPNSSKIFENGKSTELQSNESCVPTMESRPLAEEAMKKFGDGMSVDYPNEKGTLTGEGSLFLSSSSKSFANGKSTELHSNESCVQAAESRSFENGMPADYQNEKGTLAREGSLSLNSNKIFENGTSLQTNESCVKAMDSGPLDAEAMKIYDDGMPVHYSDEKGTLAGESCCL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0587 466 Pfam Double-stranded RNA binding motif 15 77 IPR014720 -
Sto5g0587 466 Pfam Double-stranded RNA binding motif 101 164 IPR014720 -
Sto5g0587 466 Gene3D - 96 168 - -
Sto5g0587 466 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 1 6 321 IPR031147 GO:0003725
Sto5g0587 466 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 13 82 IPR014720 -
Sto5g0587 466 CDD DSRM_AtDRB-like_rpt1 13 81 IPR044450 GO:0003725
Sto5g0587 466 PANTHER RIBONUCLEASE III 6 321 IPR011907 GO:0003723|GO:0004525|GO:0006364
Sto5g0587 466 Gene3D - 14 95 - -
Sto5g0587 466 SUPERFAMILY dsRNA-binding domain-like 101 168 - -
Sto5g0587 466 SMART DRBM_3 100 167 IPR014720 -
Sto5g0587 466 SMART DRBM_3 14 81 IPR014720 -
Sto5g0587 466 SUPERFAMILY dsRNA-binding domain-like 14 81 - -
Sto5g0587 466 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 99 168 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0587 Sto-Chr5 3802912 3806854 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0587 - - gmx:100782651 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0587 5 3802912 3806854 Sto5g0587 5 3802912 3806854 ECH