Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0552 ATGGACTCGATTCCTTTTCACGATGGCAACATATACAATTTCCTCAAGAAACGAAGCCTCGAACCCAGCCTAGATGTTAATCATAGTATGCAGATTCACTCCTCGTTGATTCGGAGGCTTTCTCAAGAAAGAGAATTAGAGGGTCATCGTGGTTGTGTTAATGCAGTGGCTTGGAATTCAACCGGTTCACTGTTGATATCTGGATCAGATGACACAAGGATCAATATTTGGAGCTATTCTGGTCGAAAACTTTTGCATTCAATTGACACTGGACATACAGCCAATATATTCTGTACAAAATTTATTCCTGAAACTTCTGATGAGCTTGTGGTGTCTGGAGCCGGAGATGCTGGGGTtcggttatttaatttatctcgcTTAAATGAGAGTGGAGATAATGCCGTTGCTGCATCAGCGCTTTATCAATGTCACACTAGAAGAGTCAAGAAGTTGGCTGTTGAAAACGGAAACCCAAATGTGGTATGGAGTGCCAGTGAAGATGGGACCCTGAGACAGCATGACTTTCGGGAAGGCACCTCTTGTCCTCCGGCAGGGTCTTCCCACCAAGAGTGTCGTAATGTTCTACTTGACTTGCGGAGTGGAGCCAAAAAGTCACTCGCTGATCCTCCTAAACAAGTCCTTGCTCTAAAATCTTGTGATATTAGTTCTATTAGGCCACATTTGCTCCTTGTTGGTGGGAGTGATGCCTTCGCACGTTTATATGACAGAAGGATGCTACCACCTTTGACCTCTTGTCGGAAGAGATCGTCACCACCTCCCTGTGTCAATTATTTCTGTCCAATGCATCTTTCTGACTGTGGACATCCAAGCTTGCACTTGACTCACGTAACATTCAGTCCTGATGGAGAGGAGGTTCTCCTCAGCTATAGTGGAGAGCATGTTTACCTAATGAATGTAAATCATGCTGGAGAGAATGCAATGCAATATACTTCAGGAGACAATTTAAAGCTAATGAATTACTCCCCAACAACTGAGGGGGTCGTAGTGCAGCCTCCTTTCTGCCCAAAAGGTTTTCCTATAAGAAATAATGTTGCTACAAAGCGTGACAAGTTCATGGAACTAAATGAATTTGCCAAAAAATCCTTGGAGGAGGAGAAATCTTATTATGGAATTGAAGCATGTAATGAAGTTTTGGATGGCCACGGTTCTATTCTTGATCCAGCACTCAAATATGAATTCTTGTGTGCCCGTGCTGCATTGTTGCTCAAgAGGAAGTGGAAAAATGATGCTCATATGGCCTTAAGGGACTGCTATAGTGCGAGAAAAATTGATGATTTATCCTATAGAGCTTTTTACTGCGCTTCAGAAGCTTTGTCACAGTTGGGTAAACACAAAGAAGCCTTGAATTTTGCTATATATGCTCACTCGTTGGCCCCGTCTGTATCTGAAGTTGCAGAAAGAGTGGAGAATGTAAAGAAGGATATAGCTTCAGCTGAAGCTGAAAAAAATAACAAGACAAATGATGGAGCATCAAGGTTTGAAAGTCGAGGTGCAAGAATATTTTCACTGAGTGACATACTCTATCGATCAGAAGCTAATAGTGATGCTTCACAAGATGGTCCTAGATCTGAGAGAGATGATTCTGATTATGATGAGGAATTGGACTTGGACTTTGAAACGTCAATTTTAGGTGATGAGGAGCGTGATGCTGAATCCAATATTGTTCATGGGAGTTTAAATCTTAGAATTCATCGAAGAGGTGACTCCAGAGAAAATGCTGGTGTAAATGGCTCATGTGAATCACCCTCATCTTCATCACAGATTGACATTGCATCTTATCAGCCTGAAGCAGCTATCGATATGAAGCAGAGATTTGTCGGCCATTGTAATGTTGGAACTGACATAAAACAGGCCAGTTTTCTTGGTCAAAGAGGGGAATATGTTGCTAGTGGAAGTGATGATGGAAGATGGTTTATTTGGGAAAAGCAGACTGGTAGACTCATAAAAATGCTCAACGGTGATGAAGCAGTTGTAAATTGTGTACAGTGCCATCCATATGATTTTGTTGTGGCAACCAGTGGTATTGATAACACCATAAAGATATGGACTCCATCTGCTCCTGTTCCATCTTCCGTGGCTGGTGGGTCAGCAGGACCAGAAACTGCTGATGTGTTGGTTGCCATGGAGAACAATCAACGGAAGTTACGCCGTAATCGTGATTCTATCCTACCATTTGAGCTTTTAGAGCCATTTAGAATGCACGAGTTTCCAGAAGGATCATTGCGATTGCGTCCATTTGAATGTGCCCAAAGCTAA 2277 0.4203 MDSIPFHDGNIYNFLKKRSLEPSLDVNHSMQIHSSLIRRLSQERELEGHRGCVNAVAWNSTGSLLISGSDDTRINIWSYSGRKLLHSIDTGHTANIFCTKFIPETSDELVVSGAGDAGVRLFNLSRLNESGDNAVAASALYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNVLLDLRSGAKKSLADPPKQVLALKSCDISSIRPHLLLVGGSDAFARLYDRRMLPPLTSCRKRSSPPPCVNYFCPMHLSDCGHPSLHLTHVTFSPDGEEVLLSYSGEHVYLMNVNHAGENAMQYTSGDNLKLMNYSPTTEGVVVQPPFCPKGFPIRNNVATKRDKFMELNEFAKKSLEEEKSYYGIEACNEVLDGHGSILDPALKYEFLCARAALLLKRKWKNDAHMALRDCYSARKIDDLSYRAFYCASEALSQLGKHKEALNFAIYAHSLAPSVSEVAERVENVKKDIASAEAEKNNKTNDGASRFESRGARIFSLSDILYRSEANSDASQDGPRSERDDSDYDEELDLDFETSILGDEERDAESNIVHGSLNLRIHRRGDSRENAGVNGSCESPSSSSQIDIASYQPEAAIDMKQRFVGHCNVGTDIKQASFLGQRGEYVASGSDDGRWFIWEKQTGRLIKMLNGDEAVVNCVQCHPYDFVVATSGIDNTIKIWTPSAPVPSSVAGGSAGPETADVLVAMENNQRKLRRNRDSILPFELLEPFRMHEFPEGSLRLRPFECAQS 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0552 758 Gene3D - 567 694 IPR015943 GO:0005515
Sto5g0552 758 MobiDBLite consensus disorder prediction 518 539 - -
Sto5g0552 758 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515
Sto5g0552 758 Pfam WD domain, G-beta repeat 656 689 IPR001680 GO:0005515
Sto5g0552 758 Gene3D - 28 337 IPR015943 GO:0005515
Sto5g0552 758 Coils Coil 468 495 - -
Sto5g0552 758 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 22 757 - -
Sto5g0552 758 SUPERFAMILY TPR-like 394 471 IPR011990 GO:0005515
Sto5g0552 758 Gene3D Tetratricopeptide repeat domain 349 483 IPR011990 GO:0005515
Sto5g0552 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Sto5g0552 758 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 22 757 IPR045151 -
Sto5g0552 758 SUPERFAMILY WD40 repeat-like 39 689 IPR036322 GO:0005515
Sto5g0552 758 SMART WD40_4 263 305 IPR001680 GO:0005515
Sto5g0552 758 SMART WD40_4 39 78 IPR001680 GO:0005515
Sto5g0552 758 SMART WD40_4 134 174 IPR001680 GO:0005515
Sto5g0552 758 SMART WD40_4 209 242 IPR001680 GO:0005515
Sto5g0552 758 SMART WD40_4 651 690 IPR001680 GO:0005515
Sto5g0552 758 SMART WD40_4 81 123 IPR001680 GO:0005515
Sto5g0552 758 SMART WD40_4 605 648 IPR001680 GO:0005515
Sto5g0552 758 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Sto5g0552 758 ProSiteProfiles Trp-Asp (WD) repeats profile. 658 689 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0552 Sto-Chr5 3504463 3515539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0552 632 742 Miscellaneous Gene Families AT5G08390 27.434 3.17e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0552 K11807 - gmx:100793917 1199.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0552 5 3504463 3515539 Sto5g0552 5 3504463 3515539 ECH