Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0540 aTGGCCGCCAATTCCCATAGAGGTGGTTCTTTCTACGGCGTCGCGGCTCCTTACCGATCCAGAGAGGGGCTTAGCACGAGGTCGGTTGCTGGTTCCGATGAAATTCAATTGAGCATCGATCCGATGGACTTGGACGATGAGATCACCGGTCTTCACGGTCAAGTTAGAAGGTTGAGACATGTTGCTGAGGAGATAGGCACAGAAGTGAAATATCAGAAAGACTTTTTGGAACAGCTGCAAATGACAATGATAAAGGCTCAAGCTGGGGTGAAGAATAATTTGAGAAGATTGAACAAGAGCATCATACAAAATGGTTCAAACCATATAGTTCATGTCATTGTTTTCGCGTTAGTCTGTTTCTTTATAGTGTACCTATGGTCCAAAATGTCCAGAAAATGA 399 0.4411 MAANSHRGGSFYGVAAPYRSREGLSTRSVAGSDEIQLSIDPMDLDDEITGLHGQVRRLRHVAEEIGTEVKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQNGSNHIVHVIVFALVCFFIVYLWSKMSRK 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0540 132 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 45 100 IPR000727 -
Sto5g0540 132 SUPERFAMILY SNARE fusion complex 42 99 - -
Sto5g0540 132 CDD SNARE_Qc 43 99 - -
Sto5g0540 132 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 9 131 - -
Sto5g0540 132 Gene3D - 43 100 - -
Sto5g0540 132 PANTHER GOLGI SNARE BET1-RELATED 9 131 IPR039897 GO:0015031|GO:0030173
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0540 Sto-Chr5 3440683 3442712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0540 K08505 - gmx:100306642 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0540 5 3440683 3442712 Sto9g3059 9 31453639 31454576 CCT
Sto5g0540 5 3440683 3442712 Sto5g0540 5 3440683 3442712 ECH