Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0537 ATGAAGCCCCGTGACGCACCGCAATTCTGCTTAAACGATGATCGGAGAGCTCCGATTTGCTCAAAGATTCCGATAGAGCGGATGAGATCTTACCTCtgggggtttaggggttttagACAGTGCACCGCATTGGAGCTCAATGAAGTGATGTTGTCTTATTATGGGCCAGATCGACAACACCGGAGCTCTATGGCGGCGAACCGCCTCCTATTCGCCGGTCTCGAACGCTACAAATTTCTATTCGGCGTTCAAAGTCTGTGGAGGCCCATAGCTTCTCGCGCTTCAGCTTTCGATGTCATAGTCACCCCGATAAACAGCCTGAAGAAACAGATTTTAGGACTAAAATCCTCTAAGCTAACTCCAATTTCTGTTCTTCAAAACTGGGTTGATCAAGGCAATAATTTGTCAACTTCCGACCTCAGACGCATCTCCAAGGCACTCTTCCTATCAAAGCGCTATCACCAAGCACTCGAGATATTGACATGGATGGAAAACCAGAAAAGAATTCGCATGTCACCAGCAGATTATGCTGCCAAATTGGAATTAATTATACAAATGCATGGTCTGACGGAGGCTGAAGAATATTTTATGTGTCTACCCGATATATCTTCACAGAAGGCTGCCTATCTCCTACTTCTAAGAGGGTATGTAAGAAATAGACAAACAAGTAAAGCTGAGGCTTTCATGCGAAGACTCTATGATTTGGGGCTAGTTGTTAGCCCTCACCCTTATAATGAAATGATGAAACTGTACCTAGCCACATATGAGTATCACAAAATTCCCCTTGTTATCCAACTAATGAAGCGAAACAAAATACCCTGCAATGTTCTTTCCTATAATCTTTGGATGAATGCttgtggtgagagggaaggataTGGAGTTGCTGCTGCAGAGATGGTTTTCACAGAAATGAGAAAAGATATGAATGTTGAAGTGGGATGGAGCAGTCTTGCTACTTTAGCAAATGTTTATATGAAAGCAGAACAATGTGACAAAGCCATTCTGGTTCTTAGAAATGCAGAAAAGAAACTATCTAATTGTAACCGCCTTGGTTACTTTTTCCTCATAACGCTTTATGCATctttgaaggaaaaggaaggaGTTTTGCGGCTATGGAAAGCTAGTAAGGCTGTTGGTGGTAGAGTCACATGTGCCAACTACATGTGTGTTCTGTCATGCTTAATTAAGCTTGGGGACATCGTAGAAGCTGAGAAGATCTTTGTAGAATGGGAGTCTAATTGTCAGAAGTATGATATTAGAGTCTCAAATGTTCTTTTGGGGGCATACATGCGGAATGGAATGATGGAAAAAGCTGAATCATTACATATCCGCACATTGGAGAGGGGTGGTTGTCCCAATTATAAAACATGGGAGATTCTCATGGAAGGATATGTCAAGAGCCAGAGAATGGATAAGGCCATTATTGCCATGAAGAGGGCTTTTGCTATGTTGAAAGACTGTGATTGGAGGCCTCCGCATGAACTTGTGTTGGCCATTGCAGAGGATTTTGAGAAACGTGGGAATTTTGAATATGCAAATGAGTATATTACAGATATCCACAATTTTGGTCTTGCAAATTTGTCATTGTATAAAATATTGCTTCGAATGCACCTTTCTGCCAACAAACCGCCTATTCAGATCCTTAAAATGATGGACAAAGATAAAATTGAGGTGGATAATGAGACCCTTGCCATTCTTAGAGGCTTCAACTTCAATGGGTGA 1722 0.403 MKPRDAPQFCLNDDRRAPICSKIPIERMRSYLWGFRGFRQCTALELNEVMLSYYGPDRQHRSSMAANRLLFAGLERYKFLFGVQSLWRPIASRASAFDVIVTPINSLKKQILGLKSSKLTPISVLQNWVDQGNNLSTSDLRRISKALFLSKRYHQALEILTWMENQKRIRMSPADYAAKLELIIQMHGLTEAEEYFMCLPDISSQKAAYLLLLRGYVRNRQTSKAEAFMRRLYDLGLVVSPHPYNEMMKLYLATYEYHKIPLVIQLMKRNKIPCNVLSYNLWMNACGEREGYGVAAAEMVFTEMRKDMNVEVGWSSLATLANVYMKAEQCDKAILVLRNAEKKLSNCNRLGYFFLITLYASLKEKEGVLRLWKASKAVGGRVTCANYMCVLSCLIKLGDIVEAEKIFVEWESNCQKYDIRVSNVLLGAYMRNGMMEKAESLHIRTLERGGCPNYKTWEILMEGYVKSQRMDKAIIAMKRAFAMLKDCDWRPPHELVLAIAEDFEKRGNFEYANEYITDIHNFGLANLSLYKILLRMHLSANKPPIQILKMMDKDKIEVDNETLAILRGFNFNG 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0537 573 Gene3D Tetratricopeptide repeat domain 109 292 IPR011990 GO:0005515
Sto5g0537 573 PANTHER OS12G0527900 PROTEIN 101 568 - -
Sto5g0537 573 Pfam Pentatricopeptide repeat domain 236 289 IPR002885 -
Sto5g0537 573 PANTHER OS02G0796400 PROTEIN 101 568 - -
Sto5g0537 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Sto5g0537 573 Gene3D Tetratricopeptide repeat domain 317 506 IPR011990 GO:0005515
Sto5g0537 573 Pfam PPR repeat 387 412 IPR002885 -
Sto5g0537 573 Pfam PPR repeat 423 449 IPR002885 -
Sto5g0537 573 SUPERFAMILY HCP-like 319 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0537 Sto-Chr5 3423742 3425733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0537 105 491 EF-hand Containing Proteins AT1G02150 35.052 1.73e-81 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0537 - - gmx:100813805 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0537 5 3423742 3425733 Sto5g0537 5 3423742 3425733 ECH