Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0527 ATGCTTCACCATCCATTACTGTGCGCTTCCAGAGCTTCTACTCAGTGTACATTGATTGCTTCACTTTTTTCTACTGGCGACAACGGTGTGCGTACTTCATTTACTGGAAATTCTTCTGCCCATGCAACGAGGTTGAACTTAAGCCAGCAAGCATCGGGAAACAAATCAGACACTGGGCATAAAATGCTTAGTCTGACAAAGGACCGTGCTAAGGATAAGACAACTAATGTTTATGGTCGTCGTGCTGATGAACGCGTACTTGAGGAAGAGGCTTCTCAAGTGCTAAAGACCAAACCATCATGGAAGATTTTCCCTGGTCAGGCATTTCCACTGGGTGTATCTGAAGTTGACAATGGGataaatttttctattttttctcaGCATGCAACATCCATCACGCTTTGTTTAGCCCTTCCTGAGGATGAGAGAGGAAGTAGTGGCACACCGGATAGTGGCATGATAGAGCTGGCTTTGGATCCCCATTTGAACAAAACAGGGGACATTTGGCACATATGTATTGAGGATCTACCTCGGAGCAATGTTCTCTATGGATATCGTATAGATGGTCCTCGAGACTGGGGGAAGGGGCATCGGTTTGACAGCAGTATTGTGCTTGTCGATCCTTATGCAAAGCTAATTGAAGGTCGAAGACATTTTGGGGATACTAGCATGAAGTTATCTAAGTTTCTCGGCACGTATGATTTTGACGGCTTGCCTTTTGACTGGGGAGAAAACTACAAGCCTCCAAATATTCTTGAGAAAGATCttgttatatatgaaatgaaTGTTCGTGCATTTACCGCTGATGAATCTAGTGAGCTGGATGATAATATTTGTGGAAGCTATCTTGGTGTGATTGAAAAGATCCCACACCTTCTAGAGCTTGGAATCAATGCAGTTGAGTTGCTACCTGTCTTTGAGTTTGACGAGTTAGAATTCCAGAGGCGTCCAAACCCCAGAGATCACTTGATCAACTCATGGGGTTATTCAACAATCAATTTCTTTGCACCTATGAGTCGCTATGCTTGTGCTGGTGGAGGACCAATTAAAGCTTCCTGGGAGTTTAAGCAAATGGTTAAAGCCTTACATTCTGCTGGCATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAAGCTGATGATGCAAATCCATATACTACTTCATTTCGCGGAATAGATAATAAGGTTTATTACATGCTGGACAATGATGGACAACTGCTGAACTTCTCTGGATGTGGAAATACATTGAACTGTAATCATCCTGTGGTCATGGAACTCATTCTTGACAGCCTAAGACACTGGGTCACTGAATATCATGTAGATGGGTTTCGATTTGACCTTGCAAGTGTCCTTTGTCGAGGCACTGATGGTTCCCCCCTTAATGCTCCACCACTTGTCAGGGCAATTGCTAAAGATGCAGTTTTATCACGATGTAAAATCATCGCAGAACCTTGGGACTGTGGTGGTCTCTATCTTGTTGGAAGGTTCCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGACATACGAAGATTCATCAAGGGTGACTCTGGTATGAAGGGAAGCTTTGCTACTCGTGTTGCCGGATCATCTGACCTTTACAGAGTGAACAAGCGCAAGCCTTATCATAGTATTAACTTCATTATTGCACACGATGGGTTCACCTTGTGTGATCTTGTTTCATACAATTTCAAGCATAATGATGCCAATGGGGAAGGTGGAAATGATGGGTGCAATGATAATTTTAGCTGGAATTGTGGTTTTGAAGgGGAAACTGATGATGCTAGTATAAGGGCTTTAAGGTCACGGCAAATGAAAAACTTCCATTTGGCATTAATGATATCTCAGGGCACTCCAATGATGCTGATGGGAGATGAGTATGGCCATACTCGCAATGGAAATAACAATACTTATGGGCATGATAATGCCAAGAACCATTTCCTTTGGGGACAGTTGGAAGCACGGAGGAGTGATCACTTCAGGTTTTTCTCAAATGTTATAAGATTCCGGCGTACACATGATGTATTCAATCATGATTATTTTCTTGGCAAGAATGACATAACATGGCATGAAGATAATTGGGCCAATCCTGACAGCAAATTTCTTGCATTTACGCTTCATGATACAAGTGGCGGAGACATCTATCTGGCATTTAATGCTCATGACTTTTTTGTTAAAGTTATGTTGCCCACACCTCCAACAAAGAGGAGATGGTTTCGTGTGGTGGACACTAATCTGAAATCACCAGACGACTTTGTCCCTGATGGTGTCCCTGGCACAGGAAATAGCTACAACATTGCACCATTCTCCTCCATTCTTCTTGAAGCGAAGCCCTGA 2355 0.4238 MLHHPLLCASRASTQCTLIASLFSTGDNGVRTSFTGNSSAHATRLNLSQQASGNKSDTGHKMLSLTKDRAKDKTTNVYGRRADERVLEEEASQVLKTKPSWKIFPGQAFPLGVSEVDNGINFSIFSQHATSITLCLALPEDERGSSGTPDSGMIELALDPHLNKTGDIWHICIEDLPRSNVLYGYRIDGPRDWGKGHRFDSSIVLVDPYAKLIEGRRHFGDTSMKLSKFLGTYDFDGLPFDWGENYKPPNILEKDLVIYEMNVRAFTADESSELDDNICGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRDHLINSWGYSTINFFAPMSRYACAGGGPIKASWEFKQMVKALHSAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDNDGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGTDGSPLNAPPLVRAIAKDAVLSRCKIIAEPWDCGGLYLVGRFPNWDRWAEWNGKYRDDIRRFIKGDSGMKGSFATRVAGSSDLYRVNKRKPYHSINFIIAHDGFTLCDLVSYNFKHNDANGEGGNDGCNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNTYGHDNAKNHFLWGQLEARRSDHFRFFSNVIRFRRTHDVFNHDYFLGKNDITWHEDNWANPDSKFLAFTLHDTSGGDIYLAFNAHDFFVKVMLPTPPTKRRWFRVVDTNLKSPDDFVPDGVPGTGNSYNIAPFSSILLEAKP 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0527 784 CDD E_set_GDE_Isoamylase_N 109 260 IPR044505 -
Sto5g0527 784 Pfam Alpha amylase, catalytic domain 281 397 IPR006047 GO:0005975
Sto5g0527 784 SUPERFAMILY E set domains 105 244 IPR014756 -
Sto5g0527 784 CDD AmyAc_Glg_debranch 240 679 - -
Sto5g0527 784 Gene3D Immunoglobulins 90 230 IPR013783 -
Sto5g0527 784 PANTHER GLYCOGEN DEBRANCHING ENZYME 70 783 - -
Sto5g0527 784 SUPERFAMILY Glycosyl hydrolase domain 689 783 - -
Sto5g0527 784 Gene3D - 691 784 IPR013780 -
Sto5g0527 784 SUPERFAMILY (Trans)glycosidases 239 682 IPR017853 -
Sto5g0527 784 SMART aamy 260 667 IPR006047 GO:0005975
Sto5g0527 784 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 110 210 IPR004193 GO:0004553|GO:0005975
Sto5g0527 784 Gene3D Glycosidases 236 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0527 Sto-Chr5 3353167 3365707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0527 69 783 Glycoside Hydrolase AT4G09020 75.732 0.0 1156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0527 K01214 - gmx:100806342 1342.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0527 5 3353167 3365707 Sto5g0527 5 3353167 3365707 ECH