Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0508 ATGTCAGGTGGGGGATGTAGCATAGTGTGGTTCAGAAGAGATCTGAGGATAGAGGATAATCCAGCACTGACGGCGGGAATGAGAGCAGGAGCTGTGGTCGCCGTTTTTATATGGGCACCTGAAGAAGAGGGTCAATACTACCCAGGCAGGGTTTCCCGCTGGTGGCTCAAACACAGTTTGGCTCATCTCGATTCTTCTTTGAGGAATCTTGGCGCGCCTCTTATAACCAAGCGATCTACTGATAGTGTTTCTTCTCTCCTAGAGGTTGTTAATTCCACTGGAGCTACTCAACTCTTCTTCAACCACTTGTATGATCCCCTGTCACTGATTAGGGATCACCGGACAAAGGAGGTGCTGACTGCTCAAGGCATAGCCGTGCGTTCCTTTAATGCAGATTTACTATATGAACCATGGGATGTCAATGATGCCCATGGCCAGCCGTTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCAGAGGCACCTCTTCTTCCACCTAAGAGGATTATTGCAGGTGATGTATCAAGGTGCCCTTCTGATACATTAGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTAGCCCGAGCATGGTCTCCAGGGTGGAGCAATGCTGACAAGGCCTTGACCACTTTTATAAATGGTCCATTGATTGAGTACTCCAAAAATCGCAGGAAAGCTGACAGTGCGACTACCTCATTTCTTTCCCCCCATTTGCATTTTGGTGAGGTGAGTGTCAAAAAGGTCTTCCATCTTGTCCGAATTAAGCAAGTTTTATGGGCCAATGAAGGAAACGAGGCTGGTGAAGAAAGTGTGAACTTGTTCCTCAAATCTATTGGTCTTAGAGAGTATTCAAGGTACATTAGTTTCAATCATCCCTATAGTCATGAAAGGCCTCTTCTTGGCCACCTCAAGTTCTTTCCTTGGGTGGTAAATGAAGGCTATTTTAAGGCATGGAGACAAGGAAGAACTGGTTACCCTTTGGTGGATGCTGGAATGAGAGAGCTGTGGGCCACTGGATGGCTGCATGATCGAATACGTGTTGTGGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATATTTCTGGGATACTCTCTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTCTCCCTGATGGTCGTGAATTTGACCGAATAGATAATCCACAGTTTGAGGGATACAAATTTGATCCAAATGGAGAATATGTAAGGCGTTGGCTTCCAGAACTTGCCAGACTGCCAACTGAATGGATACATCACCCATGGAATGCACCAGAACCTGTACTTCAAGCCGCTGGAATCGAGCTGGGGTCAAATTACCCTCTACCCATTGTGGGAATTGATGCAGCAAAAGTCAGATTGGAAGAGGCACTGACAGAGATGTGGCAACAAGAAGCAGCTTCAAGAGCCGCCATTGAAAATGGAACTGAGGAAGGACTCGGAGACTCCTCTGAATCAGCCCCTATCGCCTTTCCTCAAGATATACAAATGGAGGAAAGTCACGAACCCGTCAGGAACAACCCCCCTCCTGTTGCTCGCCCTTACGAGGATCAGATGGTCCCTAGCATTACTTCTTTCCTCGTGAGAGTGGAAGAGGAAGAAGCTTCAGATCTCCGAAACTCAACAGAAGATAGCAGAGCTGAAGTGCCAATAAATGCAAATGTACAACAAACTGCAAGAGAGGCATTGAACCAAGGGGCGTTGCAGCAGAGTGCTCACAGAAATACTCGCCTACAAAATAATACTGCAATGGCACTGAGAAATGCACCTGAAGATTCAACAGCAGAATCTTCTAGCACTGGTAGTAGGAGAGAAAGGGACGGAGGTGTAGTTCCAGTGTGGTCTCCCCCAGCTCCTAGTTACTCAATGAATTGGAGGCGGCTACCTCAGACTGGGTAA 1968 0.4685 MSGGGCSIVWFRRDLRIEDNPALTAGMRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKHSLAHLDSSLRNLGAPLITKRSTDSVSSLLEVVNSTGATQLFFNHLYDPLSLIRDHRTKEVLTAQGIAVRSFNADLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPEAPLLPPKRIIAGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPEPVLQAAGIELGSNYPLPIVGIDAAKVRLEEALTEMWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDIQMEESHEPVRNNPPPVARPYEDQMVPSITSFLVRVEEEEASDLRNSTEDSRAEVPINANVQQTAREALNQGALQQSAHRNTRLQNNTAMALRNAPEDSTAESSSTGSRRERDGGVVPVWSPPAPSYSMNWRRLPQTG 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0508 655 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Sto5g0508 655 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Sto5g0508 655 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Sto5g0508 655 PANTHER CRYPTOCHROME 1 599 IPR002081 -
Sto5g0508 655 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Sto5g0508 655 Pfam DNA photolyase 7 163 IPR006050 -
Sto5g0508 655 Gene3D HUPs 8 206 IPR014729 -
Sto5g0508 655 PANTHER CRYPTOCHROME-1 1 599 - -
Sto5g0508 655 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Sto5g0508 655 MobiDBLite consensus disorder prediction 603 655 - -
Sto5g0508 655 Pfam Blue/Ultraviolet sensing protein C terminal 510 623 IPR020978 -
Sto5g0508 655 PRINTS DNA photolyase signature 143 159 IPR002081 -
Sto5g0508 655 PRINTS DNA photolyase signature 332 348 IPR002081 -
Sto5g0508 655 PRINTS DNA photolyase signature 352 370 IPR002081 -
Sto5g0508 655 PRINTS DNA photolyase signature 391 405 IPR002081 -
Sto5g0508 655 MobiDBLite consensus disorder prediction 603 620 - -
Sto5g0508 655 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Sto5g0508 655 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Sto5g0508 655 Gene3D - 134 293 - -
Sto5g0508 655 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 481 IPR014134 GO:0009785|GO:0009882
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0508 Sto-Chr5 3218165 3221793 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0508 K12118 - gmx:100786551 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0508 5 3218165 3221793 Sto5g0508 5 3218165 3221793 ECH