Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0492 CTGCCCGAATTCTTCTCGCCCAAAAATGCTGGTGGCGATCCTGTGGCATTTAGATGTGATAATAGTTTTATCATACAAGGAAAAGATATAAATTTTTGCATTGATCACGGATACAATTCTTTGAAGGGTTTCAAAAATAATTCCCACAATGAGATTATTGCATTTGAAACTGCAGGGGAGAGAGTTTCTAAACACAATTCTTATACACCCGGCAGTCAAATTTGTGAGGGAAATGGTAATGTTGTTGGTGATTTCCCATTGCCCTCTCTATTTACATTCTATTCTATGGCTGGGTACCAAGGGTACGTTTACAATCTGGCAAAAGATCAAAATGGCTGTCGCTTCTTACAAAGGATGGTTGACAAGGGAAGTTCTGAAGATATGCAAATAGTATTTGAGGGAATAGTAGATAATGTTGTTGAACTTATGATGGATCCTTTTGGAAATTATCTTGTCCAGAAGTTGCTGGATGTATGCAGAGAAGAACAGAAGTTGCAAATTGTTTGCATGGTCACTAAAGAGCCAGGGCAGCTTGTCAGGATATCTTTAAACACTCACGGCACACGCGTAGTACAGAAGCTGATTGAGACTCTCAACTCTAGGAAGCAAATTTCATTAGTGAAGTCAGCACTTCAAGCAGGTTTTCTTGATCTTATTAAGGATCTAAATGGAAACCATGTCATACAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATGAGTTTATTTTTTATGCGGCTGCAAAGTTTTGTGCTGACATAGCTACTCATCAACATGGATGTTGTGTACTGCAACGTTGCATTGATCATTCGATGGGCAAATATCGAGATAAACTGGTCACAGAAATATGTAGACACGGGCTTCTCCTTGCTCAAGATCCTTTTGGAAATTATGTAGTTCAGTATATAATAGAGATGGAGATCCCTACTGCCTCAGCCAAGCTGATTTCACAGTTCAAAGGGAACTACGTAAGCCTCTCTACGCAGAAATTTAGCAGTCATGTGGTTGAAAAATGCCTTAAGCACATAGGAGAGAGCAGATCCAGGATCGTCCGTGAATTGCTGTCTGCACATCACTTTGAACAGTTGTTGCAAGACCCATATGCCAACTATGTCATTCAGTCTGCTCTTGCAATGACCAAGGGTACACTTCATACATCTTTGGTTGACGCAGTTCGCCCTTACAAAATCCTGCGCACCAGCCCATATTGCAAGAGGATTTTCTCGGGAAACCTACTCAAGAAGTGA 1248 0.4071 LPEFFSPKNAGGDPVAFRCDNSFIIQGKDINFCIDHGYNSLKGFKNNSHNEIIAFETAGERVSKHNSYTPGSQICEGNGNVVGDFPLPSLFTFYSMAGYQGYVYNLAKDQNGCRFLQRMVDKGSSEDMQIVFEGIVDNVVELMMDPFGNYLVQKLLDVCREEQKLQIVCMVTKEPGQLVRISLNTHGTRVVQKLIETLNSRKQISLVKSALQAGFLDLIKDLNGNHVIQRCLQCLSCQDNEFIFYAAAKFCADIATHQHGCCVLQRCIDHSMGKYRDKLVTEICRHGLLLAQDPFGNYVVQYIIEMEIPTASAKLISQFKGNYVSLSTQKFSSHVVEKCLKHIGESRSRIVRELLSAHHFEQLLQDPYANYVIQSALAMTKGTLHTSLVDAVRPYKILRTSPYCKRIFSGNLLKK 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0492 415 ProSiteProfiles Pumilio RNA-binding repeat profile. 210 245 IPR001313 GO:0003723
Sto5g0492 415 ProSiteProfiles Pumilio RNA-binding repeat profile. 282 317 IPR001313 GO:0003723
Sto5g0492 415 SMART pum_5 98 133 IPR001313 GO:0003723
Sto5g0492 415 SMART pum_5 246 281 IPR001313 GO:0003723
Sto5g0492 415 SMART pum_5 173 208 IPR001313 GO:0003723
Sto5g0492 415 SMART pum_5 282 317 IPR001313 GO:0003723
Sto5g0492 415 SMART pum_5 210 245 IPR001313 GO:0003723
Sto5g0492 415 SMART pum_5 134 169 IPR001313 GO:0003723
Sto5g0492 415 SMART pum_5 355 390 IPR001313 GO:0003723
Sto5g0492 415 SMART pum_5 318 352 IPR001313 GO:0003723
Sto5g0492 415 ProSiteProfiles Pumilio RNA-binding repeat profile. 246 281 IPR001313 GO:0003723
Sto5g0492 415 CDD Pumilio 91 409 IPR033712 GO:0003723
Sto5g0492 415 Pfam Pumilio-family RNA binding repeat 322 355 IPR001313 GO:0003723
Sto5g0492 415 Pfam Pumilio-family RNA binding repeat 177 201 IPR001313 GO:0003723
Sto5g0492 415 Pfam Pumilio-family RNA binding repeat 138 170 IPR001313 GO:0003723
Sto5g0492 415 Pfam Pumilio-family RNA binding repeat 289 305 IPR001313 GO:0003723
Sto5g0492 415 Pfam Pumilio-family RNA binding repeat 103 135 IPR001313 GO:0003723
Sto5g0492 415 Pfam Pumilio-family RNA binding repeat 215 244 IPR001313 GO:0003723
Sto5g0492 415 Pfam Pumilio-family RNA binding repeat 251 284 IPR001313 GO:0003723
Sto5g0492 415 Pfam Pumilio-family RNA binding repeat 359 377 IPR001313 GO:0003723
Sto5g0492 415 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 22 415 - -
Sto5g0492 415 ProSiteProfiles Pumilio RNA-binding repeat profile. 353 390 IPR001313 GO:0003723
Sto5g0492 415 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 70 415 IPR033133 GO:0003723
Sto5g0492 415 ProSiteProfiles Pumilio RNA-binding repeat profile. 170 208 IPR001313 GO:0003723
Sto5g0492 415 ProSiteProfiles Pumilio RNA-binding repeat profile. 95 133 IPR001313 GO:0003723
Sto5g0492 415 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 22 415 - -
Sto5g0492 415 SUPERFAMILY ARM repeat 99 408 IPR016024 -
Sto5g0492 415 Gene3D - 89 412 IPR011989 -
Sto5g0492 415 ProSiteProfiles Pumilio RNA-binding repeat profile. 134 169 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0492 Sto-Chr5 3141148 3144310 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0492 - - aip:107608433 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0492 5 3141148 3144310 Sto5g0492 5 3141148 3144310 ECH