Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0449 CTGAGTTCGGAAGCGAGTTGCAAGACTCAGCTCTGCAATTATCTTAGTTTTAGCTCAGTTTCAGCTGCTGCTAGCCGGCGGCGGAGAATGGAAAACGCCGACGTTTTCTTGGGCTTACATGATTTTCTGGAGCGCATGCGCCAACCCTCTGCCGCCGATTTCGTCAAAGCAATCAAGAGCTTTATTGTGTCATTTTCAAATAATGCTCCAGATCCAGAGAGGGATAGTGCTGCAGTACAGCAGTTCCTTGCTAATATGGAAGCAGCTTTCAGAGCTCATCCACTTTGGGCTGGCTGCTCTGAGGAAGAGCTAGAGAGTGCTGGTGAAGGGCTGGAGAAGTATGTCATGACGAAGTTATTTACCCGTGTATTTGCTTCACTTCCAGATGATGTAAAACTTGATGACCAACTTTCTGAAAAGATGGCTTTGGTTCAACAGTTTATTCGACCAGAAAATTTGGATGTCAGGCCAACCTTTCTGAATGAAACATCATGGTTGCTTGCTCAGAAAGAATTGCAGAAGATCAACATGTACAAGGCACCAAGAGACAAACTTGTGTGCATCCTGAATTGTTGCAAGGTTATcaataatttgttaattaatgcTTCTGTTGCTTCGAATGAGCATCCTCCAGGAGCTGATGAGTTTCTTCCTGTGCTAATTTATGTTACTATAAAGGCAAACCCTCCCCAACTGCACTCCAACCTACTGTACATACAAAGGTTTAGACGTCAATCTCGATTGGTTTCTGAAGCAGCCTACTTCTTCACAAACATACTCTCTGCTGAGTCCTTCATCACAAACATTGATGCAAATGCCCTTTCAATGGATGAAACTGAATTTGAGAGAAACATTGAATCTGCTCGTGCTGTCCTTTCTGGACTTTCAACTGATTTGCAAGATCAACCTAGATTATCTGATCAAAGTTATGGAGACCACTCAAGAGCTGAGCCAATTAAGGAGTTTTCTTTACAAACCCCATCGTCTGACTCAAAATCTGAAAATAAGAAAGTAACCTTTTCAGAGCAGTTACCAATAACAAAGATTCCATCCCTCTCAGATTTGGAGAACAAAGGGGCAAGTATGCTTTTGAAGGAGGATCAGGCCAATGAAGTTTTCAGGGAGTATCCGTATTTGTTTGCTCGTGCCGGTGACCTAACAGTCAGTGATGTGGAAGACCTGCTAAATAATTACAAACAACTTGTTACCAAGTATGTATGTCTTTCCAAAGGGTTAGGTGTCTCTCCTACATCTCATCCTCCAACCGATACACAAAATAATGTACAAGACCAAACTGAGACCAAAGTAGATTCTTCGAATAGTGGACATGTAGATGcagatgaaaagaaagaaaaatcctTGGATAGGACCGAGGATAATTCAGATGCTGTATCACTTTCTAGGGAGAAAAATCTTGAATCTGACCTGCCACATGATGAAGCAGTTGCACCTGAGGGTGGAGGCAGTTTTGAATCCGCTTACTGA 1485 0.4168 LSSEASCKTQLCNYLSFSSVSAAASRRRRMENADVFLGLHDFLERMRQPSAADFVKAIKSFIVSFSNNAPDPERDSAAVQQFLANMEAAFRAHPLWAGCSEEELESAGEGLEKYVMTKLFTRVFASLPDDVKLDDQLSEKMALVQQFIRPENLDVRPTFLNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLINASVASNEHPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRRQSRLVSEAAYFFTNILSAESFITNIDANALSMDETEFERNIESARAVLSGLSTDLQDQPRLSDQSYGDHSRAEPIKEFSLQTPSSDSKSENKKVTFSEQLPITKIPSLSDLENKGASMLLKEDQANEVFREYPYLFARAGDLTVSDVEDLLNNYKQLVTKYVCLSKGLGVSPTSHPPTDTQNNVQDQTETKVDSSNSGHVDADEKKEKSLDRTEDNSDAVSLSREKNLESDLPHDEAVAPEGGGSFESAY 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0449 494 ProSiteProfiles VPS9 domain profile. 131 275 IPR003123 -
Sto5g0449 494 MobiDBLite consensus disorder prediction 415 439 - -
Sto5g0449 494 Gene3D - 46 126 - -
Sto5g0449 494 Pfam Domain of unknown function (DUF5601) 56 120 IPR041545 -
Sto5g0449 494 Gene3D VPS9 domain 128 294 IPR037191 -
Sto5g0449 494 PANTHER BNAC09G47180D PROTEIN 30 430 - -
Sto5g0449 494 MobiDBLite consensus disorder prediction 440 480 - -
Sto5g0449 494 Pfam Vacuolar sorting protein 9 (VPS9) domain 167 270 IPR003123 -
Sto5g0449 494 PANTHER RAB GDP/GTP EXCHANGE FACTOR 30 430 IPR045046 GO:0005085|GO:0016192
Sto5g0449 494 SUPERFAMILY VPS9 domain 40 286 IPR037191 -
Sto5g0449 494 MobiDBLite consensus disorder prediction 415 494 - -
Sto5g0449 494 SMART vps9_2 164 284 IPR003123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0449 Sto-Chr5 2799468 2804500 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0449 K20131 - gmx:100810958 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0449 5 2799468 2804500 Sto5g0449 5 2799468 2804500 ECH