Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0427 ATGATCTCCGTCTATGTGAAGTGTTCTTTTCTAGACGACGCACACAAGCTTTTCGATGAAATGCCTGACAGAAATATCATTACGTGGACAACGATGGTATCTGCGTATACCAATTGTGGGAGGCCTCATGAGGCTCTTAGACTGTACAATCAGATGCTAGGATCTAGAACGCAGGAATCCAATGAATTCTTGTACTCTGCTGTTCTGAAGGCGTGTGGTCTTGTGGGAGATGCTAAAATGGGTAAGCTGATTCATCAAGATTTATATAGAGGTAGGTTGGAGTTTGACACTGTTTTGATGAATGCACTCTTGGATATGTATGTCAAATGTGGAAATTTAAGGGACGCCCAAGAAGTTTTCAACTCAATCTTGTGTAAAAATTCAACTTCGTGGAACACTCTCATTCTGGGTTATACTAAAGAAGGGTTGGTGGATGAAGCACTGTATTTGTTCAATCGAATGCCAGAACCAGATCTTGTATCTTGGAACAGTATCATTGCTGGCCTCGCATATAATGGTAGTCCCCATGCTTTGCAATTTGTTTCTATGATGCACAGGAAAGGCCTTAAACTAGATTCATTCACATTCCCATGCGCTCTCAAAACCTGTAGTTATCATAGTGATTTAACCATGGGTAGACAAATCCATTCTCATATTATCAAGTCAGGGTTTGAGTCTAGCTTTTACAATATATCAGCATTGGTTGACATGTATTCAAATTGCAAGATTTTAAATGAAGCAATGAAGATATTTGATCAATACTTTATGAGCTGTTCTTCTATCGCTGAAGGCTTGGCACTCTGGAATTCTATGCTTTCTGGGTATGTTGCCAATGACGATTATGCAAAGGCTCTCAATCTGATTGCACATATACATCACTCTGGTGCAAAATTTGATTCCTATACTTTTGGTATTGCTTTGAAAGTTTGTATCTACTTTAAGAACTTGAGATTGGCATCTCAAGTGCATGGTTTGGTAATAACCAGTGGCTATGAGTTAGATTATGTCGTTGGAAGCATTCTTATTGACTTATATGCAAAACAGGGCGATATTAGCATTGCATTTATACTGTTTGAAAGGTTATCAGATAAAGATGTTGTCGCTTGGTCTAGTTTGATTGCTGGTTGCGCTAGACTGGGTTTTGATGCATTAGCTTTTTCTCTCTTTAGGGACATGGTTAATTTAGATCTTGAGATTGATCAATTTATCATTTCCAGTGTTCTGAAAGCTTCCTCAAGTTCATCATCTCTACGAAGTGGCAAACAAATTCATGCTTTCTGTCTCAAGAAGGGATGTGAATCAGATGGAGTTACTATAACATCGCTTATTGACATGTATGCAAAATGTGGTGAGATTGAGGATGGCTTAGCTTTGTTTCGTTGTCTTTCAGAAGTGGATACCATGTGTTGGACAGATCTGGGAATGTGGGATAGTTTAAGCAAAGTCAGGGAAGCTGCCAAGAATGTAGACATAAAAGAAGCTGGAAAAAGTTGGATTGAGATATCAAGTTGA 1512 0.3869 MISVYVKCSFLDDAHKLFDEMPDRNIITWTTMVSAYTNCGRPHEALRLYNQMLGSRTQESNEFLYSAVLKACGLVGDAKMGKLIHQDLYRGRLEFDTVLMNALLDMYVKCGNLRDAQEVFNSILCKNSTSWNTLILGYTKEGLVDEALYLFNRMPEPDLVSWNSIIAGLAYNGSPHALQFVSMMHRKGLKLDSFTFPCALKTCSYHSDLTMGRQIHSHIIKSGFESSFYNISALVDMYSNCKILNEAMKIFDQYFMSCSSIAEGLALWNSMLSGYVANDDYAKALNLIAHIHHSGAKFDSYTFGIALKVCIYFKNLRLASQVHGLVITSGYELDYVVGSILIDLYAKQGDISIAFILFERLSDKDVVAWSSLIAGCARLGFDALAFSLFRDMVNLDLEIDQFIISSVLKASSSSSSLRSGKQIHAFCLKKGCESDGVTITSLIDMYAKCGEIEDGLALFRCLSEVDTMCWTDLGMWDSLSKVREAAKNVDIKEAGKSWIEISS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0427 503 PANTHER BNAC03G28070D PROTEIN 261 472 - -
Sto5g0427 503 PANTHER BNAC03G28070D PROTEIN 2 40 - -
Sto5g0427 503 PANTHER BNAC03G28070D PROTEIN 142 194 - -
Sto5g0427 503 PANTHER BNAC03G28070D PROTEIN 41 147 - -
Sto5g0427 503 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 142 194 - -
Sto5g0427 503 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 41 147 - -
Sto5g0427 503 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 261 472 - -
Sto5g0427 503 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 40 - -
Sto5g0427 503 Pfam PPR repeat 99 126 IPR002885 -
Sto5g0427 503 Pfam PPR repeat 130 156 IPR002885 -
Sto5g0427 503 Pfam PPR repeat 268 288 IPR002885 -
Sto5g0427 503 Pfam PPR repeat 437 462 IPR002885 -
Sto5g0427 503 Pfam PPR repeat 339 365 IPR002885 -
Sto5g0427 503 Pfam PPR repeat 367 395 IPR002885 -
Sto5g0427 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Sto5g0427 503 Gene3D Tetratricopeptide repeat domain 127 180 IPR011990 GO:0005515
Sto5g0427 503 Gene3D Tetratricopeptide repeat domain 1 126 IPR011990 GO:0005515
Sto5g0427 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Sto5g0427 503 TIGRFAM PPR: pentatricopeptide repeat domain 130 155 IPR002885 -
Sto5g0427 503 TIGRFAM PPR: pentatricopeptide repeat domain 1 26 IPR002885 -
Sto5g0427 503 TIGRFAM PPR: pentatricopeptide repeat domain 27 53 IPR002885 -
Sto5g0427 503 TIGRFAM PPR: pentatricopeptide repeat domain 367 400 IPR002885 -
Sto5g0427 503 Pfam PPR repeat family 24 72 IPR002885 -
Sto5g0427 503 Gene3D Tetratricopeptide repeat domain 315 421 IPR011990 GO:0005515
Sto5g0427 503 Gene3D Tetratricopeptide repeat domain 199 314 IPR011990 GO:0005515
Sto5g0427 503 Gene3D Tetratricopeptide repeat domain 422 487 IPR011990 GO:0005515
Sto5g0427 503 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0427 Sto-Chr5 2663634 2665577 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0427 1 501 Glycoside Hydrolase AT3G49170 23.455 2.26e-42 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0427 - - gmx:100780678 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0427 5 2663634 2665577 Sto5g0427 5 2663634 2665577 ECH