LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g0420	ATGAGGGCCGCTGTTGAGGCATCAGTGGTGGAGAGGTTAGATGACGGAGAAAAGGATAAGAAGAAGAAACGCCGATCCAATCGTCGATCCAAACAAGCTTCTACATCCTCAGGTATTCCTGCATCTAGCGCAGGGTTTTCTACTAGTTTATCTGTTAGAGGATTGAACGAGATACATGGGGTGTCATCGGAGTGCTCGGGAAACATCAGGACACCTACTCAAGCAGCTGCTTTGTCTAACAACTCCTCATCGAAGCAGCAGGAAGTCTCCCCTAATGAGCAAGGGCTATCCACTGCATCAAATGTGGCTTTCACTTCAATGCCACCAATGCATATCAATGAGCATCAAATGGACCCTGGGGATTTGCAAAGCATGCAAGGAGTGTGCTCAAAATCATGTTCTGAGCCAGTTGGATCATCAGGAATTTACACGAACAAAGATTTATTCCCTTCCAGTCAGATGGGGGCTTGTGCCCAGAGAAATTATTTTAGTTCACACTGGTCAACGGAAGCTGTTGAGAAGGCTTTGGAGAAGGGTGATGTTTTTAAAGCTCTTTTTCGTGTCAATGCTCACAATAGACTTGAGGCCTATTGTAAAATTGATGGAGTACCAACGGACGTTCTTGTTAGTGGAATTCCTGCCCAGAATAGAGCTGTTGATGGTGATATTGTTGCAGTGAAGATTGATCCTTTGTCCTtgtggactaaaatgaaaggaTCAAGTGGTACTGGAAAAGCTAAGGTAGATGCCAATTATGAGTCTGCTAATTACAGAAGCTGCCCTGTTCAAAACAAAGAGGATGCAAATCACAACCCCGCTCCTTACGGAAGTTGTCCTTATCctgaaaaaatttatttaaataaggaTTACCCTTCCCAGGGTTCAACTTGCCATTTAGATCCACTAGGATCCACTAGTCACTATGGTCTTGATGCTGCTTCTGATCCCTTAAATATTGGTTCTTGCATTGGGCATTGTGAAGTTATTAATGCAGTGGAAAACCTGTGTTTGTTGGTTAATTCTTTCCCTTCTAAAAGGCCAACTGGCAGGGTGGTTGCAGTTGTTGAGAGATCTCCACGTCGTGAGGCTATTGTTGGCCATCTTAATGTTAAGCAGTGGGTTTCTTTTAGGGACATACACAAAAAAGAtgcaaagagtagaaaatcggTTTCTGAACATGAGTACATCCAGTTGACTCCAACTGATCCGAAGTTGCCAAAATTGATGCTTCTTGTTAGAGATTTGCCTAACTTGGTAAAGAAAAGGCTTCAAAGCGGGGATGTGACAATTGAAATGGATCTGGTAGCTGCACGGATTGATAATTGGGTTGAAGAAACTCCTTGTCCACAAGCTCACATCTTGCATGTTTTTGGACGAGGTGGTGAAATTCAGTCTCAGTTAGATGCAATTTTGTTTGAGAATGCAATTTGTTTGTCTGAATTTTCACCTGAAGCTGTGTCTTGCCTTCCATTTGTTTCTTGGGAGGTGCCACAGAAAGAATTCCAAAGTAGAATGGATCTTAGAAATTTGTGCATATTTACCATTGATCCTTCAACTGCTACAGATCTGGATGATGCACTGTCCATTGAGAAGTTAtctaatggaaattttagagtAGGTGTCCACATTGCTGATGTTTCGTACTTTGTTTTACCTAACACGGTGATAGATAGAGAGGCTCAGTTTAGGTCAACGAGTGTATATATGTTGCAAAGTAAGTTACCAATGTTGCCAGCATTATTTTCTGAGAATATAGGTTCACTAAATCCTGGAGTGGATCGACTTGCAGTTTCTATGCTCCTGGAAATAAACCTTGCAGGGGATGTTGTAGATCAATGGATTGGTCGTACTGTGATACATTCATGCTCTAAGCTTTCATATGAACATGCACAAGACATTATTGATGGGATTATTGATGTTGAAAGCTCGAGCACAATAGGAGATCACTATCCTCAGGTGCATGGTCATTTTGTATGGCATGATGTTATCAAATCTGTGAAGAGTCTTTATGAActttcaaaagttttgaaagataaGAGGTTTAATGATGGGGCTCTACGGcttgaaaaccccaaaatttcTTTTCTGTTTGATGAATTTGGAACTCCTTACAGTTGTATGCTCTCTGAACGGAAAGAATCAAATTTTCTTGTTGAAGAATTTATGCTTTTGGCTAATAGAACAGCTGCTGAAGTGATATGTAGAGCATATCCTGATGGTGCATTATTGCGGAGGCATCCTGAACCTAATTTGCGGAAGCTGAGAGAGTTTGAGGCATTTTGTCATAAACATGGTTTAGAACTGGACACATCTTCATCTGGCCAGTTTCATATGTCATTAGAGAAGATCAGGGAAAAGCTCAAGGGTGACCCTACACTTTGTGATATTCTTATTTCCTATGCTACAAGGCCAATGCAGTTGGCTTCTTATTTCTGTAGTGGGGATTTGAAGGACAATGAAAATGGTTGGGGTCATTATGCATTAGCTCTCTCTGTTTACACTCATTTTACATCACCTCTGCGTCGATATCCTGATATTGTTGTTCATCGGACACTACTTGCTGCTATAGAGGCTGAGGAAATGTATCTGAAGCATCAAAAGACATTTAAGAAGGGAGAGGGAGTGCAGAAAAGATATTTCACTGGTTTGAATTTTGGTAAAGAAGCTGCAGAATCTGTTGAAGGTAAAGAAGCTCTATCAGCTGCAGCTTTGAAGCATGGAGTTCCGAGTTCTGAATTACTTGGAGATGTTGCTTCTTATTGCAATGAAAGAAAGCTAGCTTGTAGAAATGTCAAGGACGCTTGTGATAAACTCTACATGTGGGCTCTCCTCAAGAATAAGGAGGTGCTATTATCAGAAGCAAGAATATTGGGACTTGGCCCAAGGTTCATGTCAATTTATATTCAAAAGCTAGCTATTGAGCGGCGCATATATTATGATGAAGTTGAAGGCTTGTTTGCTGAATGGCTTGATGCGACATCCACTTTGCTGCTTAGCATGTGCACTCATAAACGTGCATTTAGGAGAGGTACCACTGGTAAATGGAGGGCATTTGAGGAAGTTGTGTCACTCTCTTGTCCATGTGACTTGAAAGTTTCCATAAATGGTTCTGATGAGCGTGATGCAATTAATGTGGGAGATGGTATTGCTACTAAGGGCAGGGATCTCATTTCCAGATCAGACAGTTCGGGCACTGAAATTGACCCATCAGTTTTTCCTCTCACTCTGCGTCTTCTTTCAACAGTTCCAGTAGCACTTCATGCTGTTGGTGGTGACGATGGACCTCTTGATATTGGGGTGAGGCTGTACATGAGCTCCTATATAAGGTGA	3330	0.4042	MRAAVEASVVERLDDGEKDKKKKRRSNRRSKQASTSSGIPASSAGFSTSLSVRGLNEIHGVSSECSGNIRTPTQAAALSNNSSSKQQEVSPNEQGLSTASNVAFTSMPPMHINEHQMDPGDLQSMQGVCSKSCSEPVGSSGIYTNKDLFPSSQMGACAQRNYFSSHWSTEAVEKALEKGDVFKALFRVNAHNRLEAYCKIDGVPTDVLVSGIPAQNRAVDGDIVAVKIDPLSLWTKMKGSSGTGKAKVDANYESANYRSCPVQNKEDANHNPAPYGSCPYPEKIYLNKDYPSQGSTCHLDPLGSTSHYGLDAASDPLNIGSCIGHCEVINAVENLCLLVNSFPSKRPTGRVVAVVERSPRREAIVGHLNVKQWVSFRDIHKKDAKSRKSVSEHEYIQLTPTDPKLPKLMLLVRDLPNLVKKRLQSGDVTIEMDLVAARIDNWVEETPCPQAHILHVFGRGGEIQSQLDAILFENAICLSEFSPEAVSCLPFVSWEVPQKEFQSRMDLRNLCIFTIDPSTATDLDDALSIEKLSNGNFRVGVHIADVSYFVLPNTVIDREAQFRSTSVYMLQSKLPMLPALFSENIGSLNPGVDRLAVSMLLEINLAGDVVDQWIGRTVIHSCSKLSYEHAQDIIDGIIDVESSSTIGDHYPQVHGHFVWHDVIKSVKSLYELSKVLKDKRFNDGALRLENPKISFLFDEFGTPYSCMLSERKESNFLVEEFMLLANRTAAEVICRAYPDGALLRRHPEPNLRKLREFEAFCHKHGLELDTSSSGQFHMSLEKIREKLKGDPTLCDILISYATRPMQLASYFCSGDLKDNENGWGHYALALSVYTHFTSPLRRYPDIVVHRTLLAAIEAEEMYLKHQKTFKKGEGVQKRYFTGLNFGKEAAESVEGKEALSAAALKHGVPSSELLGDVASYCNERKLACRNVKDACDKLYMWALLKNKEVLLSEARILGLGPRFMSIYIQKLAIERRIYYDEVEGLFAEWLDATSTLLLSMCTHKRAFRRGTTGKWRAFEEVVSLSCPCDLKVSINGSDERDAINVGDGIATKGRDLISRSDSSGTEIDPSVFPLTLRLLSTVPVALHAVGGDDGPLDIGVRLYMSSYIR	1109

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g0420	1109	SUPERFAMILY	Nucleic acid-binding proteins	466	946	IPR012340	-
	Sto5g0420	1109	Gene3D	-	155	254	-	-
	Sto5g0420	1109	SUPERFAMILY	Nucleic acid-binding proteins	348	476	IPR012340	-
	Sto5g0420	1109	ProSitePatterns	Ribonuclease II family signature.	825	849	IPR022966	-
	Sto5g0420	1109	SUPERFAMILY	Nucleic acid-binding proteins	161	357	IPR012340	-
	Sto5g0420	1109	Pfam	RNB domain	504	856	IPR001900	GO:0003723\|GO:0004540
	Sto5g0420	1109	PANTHER	RIBONUCLEASE	25	1107	-	-
	Sto5g0420	1109	MobiDBLite	consensus disorder prediction	1	45	-	-
	Sto5g0420	1109	SMART	RNB_2	504	858	IPR001900	GO:0003723\|GO:0004540
	Sto5g0420	1109	MobiDBLite	consensus disorder prediction	31	45	-	-
	Sto5g0420	1109	Hamap	DIS3-like exonuclease 2 [DIS3L2].	21	1084	IPR028591	GO:0000175\|GO:0034427
	Sto5g0420	1109	MobiDBLite	consensus disorder prediction	7	21	-	-
	Sto5g0420	1109	Pfam	Dis3-like cold-shock domain 2 (CSD2)	395	474	IPR041505	-
	Sto5g0420	1109	Gene3D	-	379	462	-	-
	Sto5g0420	1109	PANTHER	DIS3-LIKE EXONUCLEASE 2	25	1107	-	-
	Sto5g0420	1109	MobiDBLite	consensus disorder prediction	75	97	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g0420	Sto-Chr5	2619464	2625247	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g0420	K18758		-	gmx:100817387	1514.21

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g0420	5	2619464	2625247	Sto5g0420	5	2619464	2625247	ECH