Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0400 ATGGACGATTCCGATACTGCGCTGCAACTCATCTCCGAGATCGGAGTTCGTCTCGGCAAACAAAGTCGTCCTACCAAGGATTTCATTATCAAATCTTTGCGACAAGCTGTAAGTGCTTTGTCTCAGTTAGAACAGTTCTCCCTAAATGAAAGCACTAATGAGGTACTAGCTGATAAAAATAATGAAGCTTCCCAAAAGCGAGAAGCTTCCTTAAAGCCCTTGGAACATGCGATCATTTGTGGTCTGCTTCAACATGCAGACAAGGATGTTAGACTTCTAGTTGCTATTTGTGCCACAGAAATTTTTAGAGTCAGGGCACCTGAACCACCTTTTGAAGACAGAGATATTAAGGATGTATTCAAACTTATCATTAGTATGTTTGCGGATCTATCTGATACCTCAAGTCCACTCTTTTCAAAAAGGGTTAAAATATTGGACACTGTAGCTCGATTAAAATGCTCTGTGATAATGCTGGATATTGACTCTGAAGATTTGATACTTGCGATGTTCAAGACTTTTTTCTCTGTTGTGAGAGATGACCACCATGCAAGTTTGATTAATGCTATGTCTTCTATAATGATAGATGTATTAAATGTAGGAGCTTCTCAGCAACTGTTGGAAGTGATTTTACAAAATCTTATTAGAGGAAGAAATGAAGCAATTTGTGCTGCATCTCAACTAGCTGCATCTGTCATCAATTGTGCAGATGAGAAAGAGCTGAAGCCCCTCGTTTCTTGGTTTTTAACTTCATGTATTAATGACAGAGATGCAGTGAGCTGTGGGTTGAAAGAATTTTACCATGAAATTATCTTCAAAATTTTCCAATGTGCACCTCAGATGCTTCTTGCTGTAATCCCAAGCTTAATTGAAGAACTATTGGCTGATCAGGTGGATGTTCGGATAAAAGCGGTTAATTTGGTTGGAAAGCTTTTTGCACTTCCTGAGCATCGTGCTGCACAGAAGTATCATGAACTTTTTGTGGAGTTCTTAAAAAGATTTTCTGATAAATCTGTGGATGTTAGAATTAGTGCCTTACAATGCGCCAAAGCTATTTATGTGGCAAATCCATCTGGGAAGGAATCTCATGAAATTATCACTGCTGTTGAAGACCGGCTACTAGATTTTGAGGACAGAGTGAGAATGCAGGCAGTTCTTGTTGTGTGTGATCTTTCCAGGTCTAACCTGGAAGTTGTTCCATCCAAACTCATATCTCAAGCCACTGAAAGACTTCGGGATAAAAAGGCATGTCCTATATCTGTTAGAAAGACTGCCTTGCAAAAGCTTATTGAAGTGTATCAAGATTACTGCAAGAGGTGTTGTGAAGGCAGAATGACAGCTAGTGATCACTTTGAAGAGATTCCATGTAAAATTATGATGCTCTGCTTTGATAAAGATTGTAAAGAATTCAGGTCACAGAACATCGAATTGATTCTTGCTGATGATCTATTTCTGGAGAATCTTTCTGTTGAAGAAAGGACAAAGCACTGGATACACATGTTTTCTCTTTTTAGTCCTCTTCATGAAAAGGCATTGAATACTATTCTAACTCAAAAGAGAAGGTTgcaaaatgagatgaaaaactATTTGGCTTTGCGGAAGAAATTGAAGGAAAACTGTTCTGAAGATTTACATAAGAAGACTGAAAGTATTTTTACGAAAATCTCACTATCCTTTCCTGATCCTCCCAAAGCAGAAGAGTGGCTTCATAAATTGCACCAATTTAAAGATAATAATGTATTTAACTCTCTTGAACAATTATTGGAGGGACAGACTTTTACAACTGGGAAAAGCATCCAAGATAAAGTTCTGAAAATGATAGGGGAGAGCAATCCATATTTTGAGTTTCTCTGTTCACTCTTTTCAAAATGTTCTTACAACATTTTCAGCACAGATCATGTCAATTATATTCTAGATTATCTTTCCAATACCACGTTTGGAAACAAGCACTTGGAGGACTCTTCAGTGAAGCTTCTCCTGGCCATTGTTAGAACTTTCCCTACAATCATGAAAGACTCAGAAAAGCAGTTTCAAATACTGTTGGAGCAGAGGGGCCCATATAATGACAAGCTGATTGAGATCTTAGCAATGGCGGGCTCTCACAGTTCTCTTAAACTCAGTGATATTTACCCATTTCTTGAGAGAATGTGTTTGGCGGGAACTCGTACACAGGCCAAATTTGCTGTCTCAGCAATTGCTGCCTTGAGTTCAGAGCAATCAGTTTTCTCTAATTTATATGAGGAACTCATTGTTTCTTTGTATAGTCAGTGTAATGTCCCAACAGTCTTGCAGTCCTTGGGATGCATTGCACAATACTCAAAATCAACTTTTGAAACTCGAGATGAGGAGATTACATCATATATTTGTCAGAAGATTATTCAGGAGAAGCACTTAGATGATGTACATGATGCAACATCGTCTGATGATACTTTGCAGTTGAGCGATTCCTGCCAATTGAAGATATTCGGGCTAAAAACACTAGTAAAGAGGTTTCTGCCAGACCACGGGAACTGTGTGGGAGGGAAAATAAATGGTTTGTTGGACATTTTGTTAAGAATGCTGCAGCAGAGTGACCATTTTCTGAACTTAGATTCGAGTGAAAGTGACAGGGCTCATATTAGATTAGCTGCTGCAAAGTCAATTCTCCGGCTTTCTAAGAGGTGGGATCGGCATATTACGCAAGAGATTTTTCGCTTCACTATATTGATTGCTAAGGTACTTATGACTGTTAAAGAAGCTGAACTATAA 2745 0.3829 MDDSDTALQLISEIGVRLGKQSRPTKDFIIKSLRQAVSALSQLEQFSLNESTNEVLADKNNEASQKREASLKPLEHAIICGLLQHADKDVRLLVAICATEIFRVRAPEPPFEDRDIKDVFKLIISMFADLSDTSSPLFSKRVKILDTVARLKCSVIMLDIDSEDLILAMFKTFFSVVRDDHHASLINAMSSIMIDVLNVGASQQLLEVILQNLIRGRNEAICAASQLAASVINCADEKELKPLVSWFLTSCINDRDAVSCGLKEFYHEIIFKIFQCAPQMLLAVIPSLIEELLADQVDVRIKAVNLVGKLFALPEHRAAQKYHELFVEFLKRFSDKSVDVRISALQCAKAIYVANPSGKESHEIITAVEDRLLDFEDRVRMQAVLVVCDLSRSNLEVVPSKLISQATERLRDKKACPISVRKTALQKLIEVYQDYCKRCCEGRMTASDHFEEIPCKIMMLCFDKDCKEFRSQNIELILADDLFLENLSVEERTKHWIHMFSLFSPLHEKALNTILTQKRRLQNEMKNYLALRKKLKENCSEDLHKKTESIFTKISLSFPDPPKAEEWLHKLHQFKDNNVFNSLEQLLEGQTFTTGKSIQDKVLKMIGESNPYFEFLCSLFSKCSYNIFSTDHVNYILDYLSNTTFGNKHLEDSSVKLLLAIVRTFPTIMKDSEKQFQILLEQRGPYNDKLIEILAMAGSHSSLKLSDIYPFLERMCLAGTRTQAKFAVSAIAALSSEQSVFSNLYEELIVSLYSQCNVPTVLQSLGCIAQYSKSTFETRDEEITSYICQKIIQEKHLDDVHDATSSDDTLQLSDSCQLKIFGLKTLVKRFLPDHGNCVGGKINGLLDILLRMLQQSDHFLNLDSSESDRAHIRLAAAKSILRLSKRWDRHITQEIFRFTILIAKVLMTVKEAEL 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0400 914 Gene3D - 278 453 IPR011989 -
Sto5g0400 914 Coils Coil 511 538 - -
Sto5g0400 914 Pfam Sister chromatid cohesion protein PDS5 protein 27 904 - -
Sto5g0400 914 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 6 906 IPR039776 GO:0007064
Sto5g0400 914 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 6 906 - -
Sto5g0400 914 SUPERFAMILY ARM repeat 79 891 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0400 Sto-Chr5 2485751 2496771 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0400 K11267 - gmx:100777822 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0400 5 2485751 2496771 Sto5g0400 5 2485751 2496771 ECH