Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0368 ATGTACAGCACAAGTGAACCAGTGCAGGATATTTCAGATTTAACTAGAAAATTATGCAAGGTTTTGATGTCCTGTCCCACATTAGCACTTGATACTGCTCTTAATCAAACTGGAATTAGAGTTTCACCAGATTTAGTTGAAAATGTCCTTGAGAGATTTGAGAATGCTGGTATGGTAGCATTTCGTTTTTTTGAATGGGCTGAGAAGCAGCGAAGCTACTCACACAGCATCAGGGCATACCATACAACGATTGAATCTTTGGCAAAGATAAGGCAATATCAGATTATGTGGGACCTGGTGAATGCTATGAAGAAAAAGGGGATGCTAAATGTTGAGACCTTTTGTATTATTATGAGAAAGTATGCTAGGGCTCAGAAGGTAGAAGAGGCAGTCTACACATTTAATATCATGGAAAAATATGGCATATCTCCAAATCTTGCAGCATTCAATGGTTTGTTGAGTGCTTTATGCAAGTCCAAGAATGTAAGGAAGGCTCAAGAGATCTTTGACCGTACAAAGGATCGATTTGTCCCAGACTCAAAAACTTATAGCATATTGCTTGAGGGTTGGGGAAAAGCTCCTAATCTGCCAAAAGCAAGAGAGATTTTCAGAGAGATGATTGACATGGGATGCAACCCCGATATAGTCACCTATGGCATAATGGTTGACATACTTTGTAAAGCAGGAAGAGTTGATGAAGCTGTTGAGGTTGTTAAGGATATGGATAGTAATAGTTGCAGGCCAACATCTTTTATTTATAGTGTCCTGGTTCATACATATGGAGTAGAACACCGGATTGAAGATGCTATTGATACATTCCTGGAGATGGAAAGAAATGGAGTGAAGGCAGATGTTGTGGTTTATAATGCCTTGGTTGGCGCTTTTtgtaaagtaaataaatttaagaATGCATATAGAGTCTTGAATGAAATGGAACGCAAGGGGGTGACTCCTAATTCAAGGACCTATAACATACTCATAAGTAGCTTGATTGGCCATGAACAGAGTGATGAGGCTTATAGTGTCTTTCGCAGGATGATAAAGTCATGCCAACCGGATGCTGACACTTATACAATGATGATAAAAATGTTTTGTGAGAGAAATGAACTGGAGAGGGCTCTGAAAATATGGAGGTATATGAAGTTAAAACGGTTTGTCCCGAGCATGCACACTTTTCAAGTTCTTATAAATGGGCTGTGTGAAAAGGGTAATGTTACAAAAGCTTGTGTTTTGTTAGAAGATATGATACAGAAGGGAATTCGGCCATCAGGGGTTACATTTGGGAAGCTAAGGCAGTTGCTTATAAAAGAAGGCAGAGAGGATGTGCTCAAATTTCTTCAGGAGAAAATGAATCTTCTTGTCAAGGAgcctttatataattaa 1383 0.3839 MYSTSEPVQDISDLTRKLCKVLMSCPTLALDTALNQTGIRVSPDLVENVLERFENAGMVAFRFFEWAEKQRSYSHSIRAYHTTIESLAKIRQYQIMWDLVNAMKKKGMLNVETFCIIMRKYARAQKVEEAVYTFNIMEKYGISPNLAAFNGLLSALCKSKNVRKAQEIFDRTKDRFVPDSKTYSILLEGWGKAPNLPKAREIFREMIDMGCNPDIVTYGIMVDILCKAGRVDEAVEVVKDMDSNSCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMERNGVKADVVVYNALVGAFCKVNKFKNAYRVLNEMERKGVTPNSRTYNILISSLIGHEQSDEAYSVFRRMIKSCQPDADTYTMMIKMFCERNELERALKIWRYMKLKRFVPSMHTFQVLINGLCEKGNVTKACVLLEDMIQKGIRPSGVTFGKLRQLLIKEGREDVLKFLQEKMNLLVKEPLYN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0368 460 Pfam PPR repeat family 110 158 IPR002885 -
Sto5g0368 460 Pfam PPR repeat family 284 330 IPR002885 -
Sto5g0368 460 Pfam PPR repeat family 356 400 IPR002885 -
Sto5g0368 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Sto5g0368 460 SUPERFAMILY TPR-like 110 417 IPR011990 GO:0005515
Sto5g0368 460 Gene3D Tetratricopeptide repeat domain 6 172 IPR011990 GO:0005515
Sto5g0368 460 Gene3D Tetratricopeptide repeat domain 173 243 IPR011990 GO:0005515
Sto5g0368 460 PANTHER OS03G0761300 PROTEIN 1 457 - -
Sto5g0368 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Sto5g0368 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Sto5g0368 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Sto5g0368 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Sto5g0368 460 Pfam PPR repeat 252 281 IPR002885 -
Sto5g0368 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 349 IPR002885 -
Sto5g0368 460 TIGRFAM PPR: pentatricopeptide repeat domain 252 285 IPR002885 -
Sto5g0368 460 TIGRFAM PPR: pentatricopeptide repeat domain 322 349 IPR002885 -
Sto5g0368 460 TIGRFAM PPR: pentatricopeptide repeat domain 113 145 IPR002885 -
Sto5g0368 460 TIGRFAM PPR: pentatricopeptide repeat domain 390 423 IPR002885 -
Sto5g0368 460 TIGRFAM PPR: pentatricopeptide repeat domain 356 388 IPR002885 -
Sto5g0368 460 TIGRFAM PPR: pentatricopeptide repeat domain 216 249 IPR002885 -
Sto5g0368 460 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Sto5g0368 460 TIGRFAM PPR: pentatricopeptide repeat domain 182 215 IPR002885 -
Sto5g0368 460 Pfam PPR repeat 209 241 IPR002885 -
Sto5g0368 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Sto5g0368 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Sto5g0368 460 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 457 - -
Sto5g0368 460 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 175 IPR002885 -
Sto5g0368 460 Gene3D Tetratricopeptide repeat domain 244 334 IPR011990 GO:0005515
Sto5g0368 460 Gene3D Tetratricopeptide repeat domain 335 456 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0368 Sto-Chr5 2257737 2259119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0368 126 441 Glycosyltransferase AT1G05670 25.786 7.01e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0368 - - adu:107478053 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0368 5 2257737 2259119 Sto5g0368 5 2257737 2259119 ECH