Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0269 ATGCCTTGGGTTTGCGTATTTCTGGTGACGCAAATTCCAGCACAATCTAATGTGGATTGGATTCATGGGATATGCTGGGGAAAATGCGAAGAAGGAAACGGAGGCTTAGTTCGTGCCTCATCAACACCTACAATTAAAAGAGAGtacgtgaagaagaagaaggaaaagaaagaggtaTTGAAAGATGTTTTTGATCGGTTCGACGCGGACAAGGACGGGAGAATATCGAGCAAGGAGTTGATGGATTACTTGGCGTCGGTGGGAGAGTCGGTGACACATAAGGTGGCAGAGAGGGTGATTCGTGAGTTTGACTCGGACGGGGATGAGTTGTTGGAGTATGGGGACTTCGTGAGGTTGatagaagaggaagacaatGATGAGTCATCATGGGATGATGTTCTAAGGACTGCGTTTCACATGTTTGAGGCTGACAAAGGTTGTGGCTACATAACGCCCAAAGGCTTGCAGCAGATGTTGCGACGCTTAGGAGACGTTAAGTCCCACCACGAATGTGCCGCCATGATTCGAGTGTTTGATCTCGATGGCAATGGCTTCCTAGATTTTCATGAATTCCACCAAATGATGTCCCCGCCTTCTTTCCATTTCTAA 609 0.4384 MPWVCVFLVTQIPAQSNVDWIHGICWGKCEEGNGGLVRASSTPTIKREYVKKKKEKKEVLKDVFDRFDADKDGRISSKELMDYLASVGESVTHKVAERVIREFDSDGDELLEYGDFVRLIEEEDNDESSWDDVLRTAFHMFEADKGCGYITPKGLQQMLRRLGDVKSHHECAAMIRVFDLDGNGFLDFHEFHQMMSPPSFHF 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0269 202 ProSiteProfiles EF-hand calcium-binding domain profile. 55 90 IPR002048 GO:0005509
Sto5g0269 202 ProSiteProfiles EF-hand calcium-binding domain profile. 166 201 IPR002048 GO:0005509
Sto5g0269 202 Pfam EF-hand domain pair 148 195 IPR002048 GO:0005509
Sto5g0269 202 PANTHER CALCIUM BINDING PROTEIN 39 196 - -
Sto5g0269 202 ProSiteProfiles EF-hand calcium-binding domain profile. 91 126 IPR002048 GO:0005509
Sto5g0269 202 CDD EFh 134 196 IPR002048 GO:0005509
Sto5g0269 202 SUPERFAMILY EF-hand 51 196 IPR011992 -
Sto5g0269 202 ProSitePatterns EF-hand calcium-binding domain. 179 191 IPR018247 -
Sto5g0269 202 Pfam EF-hand domain pair 57 120 IPR002048 GO:0005509
Sto5g0269 202 CDD EFh 62 120 IPR002048 GO:0005509
Sto5g0269 202 ProSitePatterns EF-hand calcium-binding domain. 68 80 IPR018247 -
Sto5g0269 202 PANTHER CALMODULIN 39 196 - -
Sto5g0269 202 SMART efh_1 170 198 IPR002048 GO:0005509
Sto5g0269 202 SMART efh_1 95 123 IPR002048 GO:0005509
Sto5g0269 202 SMART efh_1 59 87 IPR002048 GO:0005509
Sto5g0269 202 Gene3D - 126 198 - -
Sto5g0269 202 Gene3D - 37 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0269 Sto-Chr5 1598764 1599718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0269 50 196 EF-hand Containing Proteins AT3G50770 50.000 1.80e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0269 K13448 - gmx:100775336 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0269 5 1598764 1599718 Sto5g0269 5 1598764 1599718 ECH