Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0180 ATGGATGAAGATCACAGTTATAGTAGCAGTGGCGGCAATAACTTGGAGACTTCCAAGGCTGAGAGATCGGTTTGGCTGATGAAGTGCCCTTTGGTGGTAGCCAAGTCGTGGCAGAATCATCCTCCGTCCCATCCCCAACCTCTCGCCAAGGTCGTACTCTCTCTTGATCCTCTTCACGCCGACGATCCCTCCGCTCTCCAGTTCACAATGGAGATGGCGGGAACCGAAGCTGTGAATATGCCAAAAACTTATTCCTTAAATATGTTCAAGGACTTTGTTCCTATGTGTGTCTTCTCTGAGACAAATCAAGGCAAGGTTGCCATGGAAGGGAAAGTAGAACATAAATTTGATATGaaaccccatggtgaaaatatTGAAGAGTATGGCAAATTGTGCCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGGTTATTGATAATGATCGTGGAGTTCTCATGAGGCCCATGCCTGGAATGGTTGGTCTAGTTTCATCCAATTCAAAGGATAAGAAGAAGACACAACCAGTGAAACAATCAGATACAAAGAGAACAAGACGTGATCGTGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAGCAGCTTGTCCAAGAGACTGATCAACCTGCTCAATTTTTGAAGGAGATACTGAATGAATTGTGCATGTACAATAAAAGAGGTGCCAATCAAGGAACGTATGAGCTGAAGCCCGAATACAAGAAATCTGTTGTTGAAGATACAACTGCAGAATAG 789 0.4233 MDEDHSYSSSGGNNLETSKAERSVWLMKCPLVVAKSWQNHPPSHPQPLAKVVLSLDPLHADDPSALQFTMEMAGTEAVNMPKTYSLNMFKDFVPMCVFSETNQGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMVGLVSSNSKDKKKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCMYNKRGANQGTYELKPEYKKSVVEDTTAE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0180 262 MobiDBLite consensus disorder prediction 174 191 - -
Sto5g0180 262 Pfam TFIIF, beta subunit N-terminus 21 136 IPR040504 -
Sto5g0180 262 PANTHER GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2 12 261 IPR003196 GO:0005674|GO:0006366|GO:0006367
Sto5g0180 262 SUPERFAMILY Rap30/74 interaction domains 12 121 IPR011039 GO:0006367
Sto5g0180 262 Gene3D - 187 254 IPR036388 -
Sto5g0180 262 CDD TFIIF_beta 14 120 - -
Sto5g0180 262 Pfam TFIIF, beta subunit HTH domain 189 252 IPR040450 -
Sto5g0180 262 SUPERFAMILY "Winged helix" DNA-binding domain 187 253 IPR036390 -
Sto5g0180 262 MobiDBLite consensus disorder prediction 165 191 - -
Sto5g0180 262 PANTHER OS01G0772200 PROTEIN 12 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0180 Sto-Chr5 1057760 1060827 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0180 K03139 - gmx:100788473 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0180 5 1057760 1060827 Sto5g0180 5 1057760 1060827 ECH