Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0165 ATGAGTAAAAGACCGCCACCAGATCCAGTGGCAGTGCTACGTGGCCACCGTGCTTCTGTGAATGATGTTTGTTTTCATCCAATAAAACCCATATTATTCTCCGGTTCTGCTGACGGTGAACTAAGGATTTGGGATACCGTTCAACATCGAACTGTGTCATCAGCATGGGTACATAGTGCTGCTCATGGGATTATTGCTGTTGCCAGTAGTGCTTCCCTTGGAAACAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTGAAATTTTGGGATATCGGTGATGGTGATTTGTCCAGGATTCCATGTCTAACAATCAAGACAAACTCTTACCACTTTTGCAAGCTTTCCTTAGTGAAAACGCCTTCAACTTGGTCTAAAGAAGGGGAAGCATCAAGAGATTGTCACAGAATTGAGCTAAAGGGAACATTTAATAGTGAAATTCCAGAGATTATAAGAAAAGAGACTCAGACCAACCAAAGCAGTTCTGAAAGCTTGGAAGGTctCTGCATTAGCAAAATTCATTCTGGGCTACAATTTGTGGCTTTATCCTCTGGGGAGCAGTCTTCCGAGGTTGGAATTTGGGATCTCAAGTCAGAAGAAAAGTTAGCACAACTACCTTCAAACACTCCTAGTAGCTCCTCAAATTTCGGCAACAAAGACAGAGGGATGTGCATGGCACTTCAATTATTTTTACCTTCTGAATCACAGGGTGTTCTAAATGTCTTGGCTGGATATGAAGATGGTTCCATGCTTTGGTGGGATGTACGGAACCCAGGAGTTCCTATAACTTCAGTGAAGTTCCATTCTGAGCCAGTTCTCAGTATTTGTACTGATGGGTTTTGCAATGGGGGTATCTCGGGAGCTGCAGATGACAGAGTTGTAATGTACAGTTTGGAGCATTCTACGGGTACGTGTGCGGTCAAGAAAGAAATCAATTTGGAGCGACCTGGCATATCAGGCACCTCAATTCGACCAGATGGAAAAATTGCTGCTACTGCTGGCTGGGACCATAGAGTGAGGATATACAATTATCGTAAAGGAAATGCTTTGGCAATATTGAAGTATCACCAGGCCACGTGCAATGCTGTTACCCATTCATCTGATAGTAAGCTTATGGCCTCTGCATCAGAGGATGCAACCGTGGCACTATGGAAATTATATCCTCCTCAAACTGGAAACTAA 1182 0.4349 MSKRPPPDPVAVLRGHRASVNDVCFHPIKPILFSGSADGELRIWDTVQHRTVSSAWVHSAAHGIIAVASSASLGNNKFVSQGRDGTVKFWDIGDGDLSRIPCLTIKTNSYHFCKLSLVKTPSTWSKEGEASRDCHRIELKGTFNSEIPEIIRKETQTNQSSSESLEGLCISKIHSGLQFVALSSGEQSSEVGIWDLKSEEKLAQLPSNTPSSSSNFGNKDRGMCMALQLFLPSESQGVLNVLAGYEDGSMLWWDVRNPGVPITSVKFHSEPVLSICTDGFCNGGISGAADDRVVMYSLEHSTGTCAVKKEINLERPGISGTSIRPDGKIAATAGWDHRVRIYNYRKGNALAILKYHQATCNAVTHSSDSKLMASASEDATVALWKLYPPQTGN 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0165 393 Gene3D - 108 392 IPR015943 GO:0005515
Sto5g0165 393 Pfam WD domain, G-beta repeat 9 45 IPR001680 GO:0005515
Sto5g0165 393 Pfam WD domain, G-beta repeat 350 385 IPR001680 GO:0005515
Sto5g0165 393 Gene3D - 4 107 IPR015943 GO:0005515
Sto5g0165 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 54 IPR001680 GO:0005515
Sto5g0165 393 PRINTS G protein beta WD-40 repeat signature 32 46 IPR020472 -
Sto5g0165 393 PRINTS G protein beta WD-40 repeat signature 78 92 IPR020472 -
Sto5g0165 393 PRINTS G protein beta WD-40 repeat signature 372 386 IPR020472 -
Sto5g0165 393 SUPERFAMILY WD40 repeat-like 4 385 IPR036322 GO:0005515
Sto5g0165 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 393 - -
Sto5g0165 393 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 45 - -
Sto5g0165 393 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 386 IPR001680 GO:0005515
Sto5g0165 393 SMART WD40_4 304 343 IPR001680 GO:0005515
Sto5g0165 393 SMART WD40_4 258 297 IPR001680 GO:0005515
Sto5g0165 393 SMART WD40_4 6 45 IPR001680 GO:0005515
Sto5g0165 393 SMART WD40_4 346 385 IPR001680 GO:0005515
Sto5g0165 393 SMART WD40_4 48 91 IPR001680 GO:0005515
Sto5g0165 393 PANTHER - 3 391 - -
Sto5g0165 393 PANTHER TRANSDUCIN BETA-LIKE 3 3 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0165 Sto-Chr5 961777 966696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0165 10 97 Miscellaneous Gene Families AT5G08390 31.818 1.59e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0165 K24770 - gmx:100800482 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0165 5 961777 966696 Sto5g0165 5 961777 966696 ECH