LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g0070	ATGGCGGTCGAGAGAATTTTTAAAGAGGAAGCCAGTGAGGAAAAAGGAGAGCGGGCCAGAATGGCATCTTTTGTTGGTGCAATGGCAATAGCTGATTTGGTCAAAACAACTTTAGGGCCGAAAGGAATGGATAAAATTTTACAATCAACAGGCAGAGGACGTGAAGTTACTGTCACTAATGATGGTGCTACCATCCTGAAGTCCCTCCACATTGATAACCCAGCTGCTAAAGTCCTTGTTGACATATCAAAAGTACAAGATGATGAAGTTGGTGATGGAACAACTTCTGTTGTTGTGTTGGCTGGGGAGCTTTTGAGGGAAGCAGAAAAGCTGGTTGCAGCAAAAATTCACCCCATGACAATAATATCAGGTTACCGAATGGCAGCTGAATGTGCTCGCGATGCTTTGTTGCAGAAGGTTGTGGATAACAAATCTGATGCTGATAAATTCAGGTCAGACTTGATGAACATTGCAATGACTACTTTGAGTTCCAAAATTCTCTCCCAGGATAAAGAACATTTTGCAAATCTGGCTGTGGATGCTGTAATGAGACTAAAGGGAAGCACTAATTTAGAAGCTATCCAGATTATAAAGAAACCTGGAGGATCACTAAAGGATTCATTTTTGGACGAAGGATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGCATAGAGGATGCAAAGATATTGGTGGCAAATACTGCCATGGACACAGACAAAGTGAAGATATACGGGGCACGTGTTCGTGTTGATTCAATGTCTAGGGTTGCCGAGATTGAAGGAGCTGAGAAGGAGAAGATGAGAGAAAAGGTGCAGAAGATAATAGCTCATGGTATCAATTGTTTTGTCAACAGACAGTtgatttacaattttccagAGGAGCTCTTTGCTGATGCGGGAGTATTGGCAATTGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTTTAGTAACTGGCGGTGAAATTGCATCTACCTTTGACAATCCTGAGTCTGTCAAGCTTGGACACTGCAAGCTTATTGAGGAGATTATGATTGGTGAGGATAAGTTGATCCACTTTTCTGGTGTTGCAATGGGGCAAGCATGCACAATAGTCTTGAGAGGTGCTAGCCACCATGTTCTCGATGAGGCTGAAAGGTCATTGCATGATGCCCTCTGCGTGCTATCTCAAACTGTTAACGACAGCAGAGTTTTGCTTGGTGGGGGATGGCCTGAGATGGTGATGGCAAAGGAAGTGGATGAATTGGCTAGGAAAACTCCTGGAAAGAAGTCTCTTGCTATTGAGTCATTCTCCAAGGCACTCTTAGCTATCCCAACAATCATTGCTGATAATGCTGGTTTGGATAGTGCGGAGTTGGTTTCTCAGCTGCGAGCAGAACACCACAAGGAAGGATGTAATGCAGGAATTGATGTCATCTCTGGCTCTGTTGGAGACATGGCTCAACTGGGAATATCTGAATCATTTAAAGTCAAGCAAGCTGTATTGCTATCTGCGATTGAGGCAGCTGAAATGATCCTTAGAGTTGATGAAATCATCAcctgtgctccaaggaggagggaAGACAGAATGTGA	1584	0.4223	MAVERIFKEEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIHPMTIISGYRMAAECARDALLQKVVDNKSDADKFRSDLMNIAMTTLSSKILSQDKEHFANLAVDAVMRLKGSTNLEAIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIEDAKILVANTAMDTDKVKIYGARVRVDSMSRVAEIEGAEKEKMREKVQKIIAHGINCFVNRQLIYNFPEELFADAGVLAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCKLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMAKEVDELARKTPGKKSLAIESFSKALLAIPTIIADNAGLDSAELVSQLRAEHHKEGCNAGIDVISGSVGDMAQLGISESFKVKQAVLLSAIEAAEMILRVDEIITCAPRRREDRM	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g0070	527	CDD	TCP1_beta	6	522	IPR012716	GO:0005524\|GO:0005829\|GO:0005832\|GO:0006457\|GO:0016887\|GO:0051082
	Sto5g0070	527	SUPERFAMILY	GroEL equatorial domain-like	13	519	IPR027413	-
	Sto5g0070	527	SUPERFAMILY	GroEL-intermediate domain like	152	399	IPR027410	-
	Sto5g0070	527	PANTHER	CHAPERONIN	5	525	IPR017998	GO:0140662
	Sto5g0070	527	Gene3D	-	142	399	IPR027410	-
	Sto5g0070	527	PANTHER	BNAA02G05110D PROTEIN	5	525	IPR012716	GO:0005524\|GO:0005829\|GO:0005832\|GO:0006457\|GO:0016887\|GO:0051082
	Sto5g0070	527	Gene3D	-	27	516	IPR027413	-
	Sto5g0070	527	ProSitePatterns	Chaperonins TCP-1 signature 2.	58	74	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Sto5g0070	527	TIGRFAM	chap_CCT_beta: T-complex protein 1, beta subunit	6	523	IPR012716	GO:0005524\|GO:0005829\|GO:0005832\|GO:0006457\|GO:0016887\|GO:0051082
	Sto5g0070	527	ProSitePatterns	Chaperonins TCP-1 signature 1.	35	47	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Sto5g0070	527	SUPERFAMILY	GroEL apical domain-like	206	372	IPR027409	-
	Sto5g0070	527	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	32	48	IPR017998	GO:0140662
	Sto5g0070	527	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	56	74	IPR017998	GO:0140662
	Sto5g0070	527	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	86	105	IPR017998	GO:0140662
	Sto5g0070	527	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	367	389	IPR017998	GO:0140662
	Sto5g0070	527	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	401	413	IPR017998	GO:0140662
	Sto5g0070	527	Pfam	TCP-1/cpn60 chaperonin family	30	517	IPR002423	GO:0005524
	Sto5g0070	527	ProSitePatterns	Chaperonins TCP-1 signature 3.	86	94	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Sto5g0070	527	Gene3D	GroEL	211	363	IPR027409	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g0070	Sto-Chr5	440982	446468	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto5g0070	200	466	Acyl Lipid Metabolism Gene Families	AT4G33240	19.435	6.07e-06	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g0070	K09494		-	zju:107422720	967.607

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g0070	5	440982	446468	Sto5g0070	5	440982	446468	ECH