Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto5g0042 ATGGCCCTTCGCCTAGGGTTTCTTCTTTCCATTTCTCTTTTCCAGgtttttctaattttatcttTAGTCCAAGCTCAGAATTTCGCCGCCAGGCTTCTTTTGACTTCCAATGCAACAACCCTTGGGGAAAGGCGATCCGAGGATTACTGTGCAATGTATGATATATGTGGACAACGCAGTGATGGAAAAGTATTGAACTGTCCATTTGGTTCCCCTGCTGTGAAGCCAAGTGATTTGCTTTCATCAAAGATCCAAAGTTTGTGTCCGACAATTACTGGGAATGTTTGCTGTACAGAAGCTCAGTTTGACACTTTACGGACTCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTTTGAATCTTTTTTGTGAGCTTACTTGTTCTCCTAATCAGAGTCTATTTATCAACGTGACTAAAGTTGCCAAGgtCGGTGATAATTTGACAGTGAATGGGATTGATTATTATATAACTGATGGTTTTGGTGAAGGGTTGTATGAATCATGCAAGGAAGTGAAGTTTGGAACTATGAATTCTCGAGTTATACAATATATTGGTGCTGGTGCCAAAAATTTTACAGATTGGTTTAAATTTATTGGTACAGAAGCACCTCTTGGTGTTCCTGGTTCTCCATATGCAataacattcctgcctaatgCTCCCGAGTCATCTGGCATGAGACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGCTGTTCTTGTGGTGATTGTCCTTCATCTTCTGCATGCTCCAACATTGCTTCTACTACCATCCAGAAGAAGGATTCATGCTCCCTGAGAATTGGGTCTTTAATGGTGAAGTGTGTTGACTTGATTTTAGCAATTTTATACATCATACTGATTTCTGTGTTCTTGGGTTGGGGATTATTTTATCGGATAAGGGAAAGAAAGGCAGCATCTACTACCAAACCTGTGTCTAATGTTGTTAATGGTACTGTACTGCATTCTCTTGATATGCAGAAGGATGAAAACCTCCCGATGCAGATGCTTGAAAATGCTCCACAAATCAGAAATGGAGTCAAACTCTCAGCTGTGCAAGGTTACATGTCAAACTTTTACAGGAAATATGGATCATATGTCGCTAGAAATCCAATAATGGTTTTGTCTTCATCCATAGCTATAGTTCTTCTACTTTGTCTAGGTCTAATCCGATTCAAGGTTGAGACACGGCCTGAAAAGCTGTGGGTAGGACCTGGGAGTAAAGCTGCACAAGAGAAACAGTTTTTTGACAGCCATCTTGCTCCATTTTACAGAATTGAACAGCTCATACTGGCAACAATTCCAGATCATGTCAATGGTATATCGCCAAACATTGTCTCTGAGAACAacattaaatttctttttgaaatacAAAAAAAGGTTGATGCAGTTCGCGGTAATTATTCAGGCTTGATGGTATCACTGCATGATATCTGTATGAAGCCACTAGATCAGAATTGTGCCACTCAAAGTGTCTTGCAGTACTTCAAAATGGATGCTGGAAATTTTGACAACTATGGGGGAGTTGAACATCTGTATTACTGCTTTGAGCATTATTCCTCAGCAGACCAATGTATGAGTGCATTTAAAGGTCCTCTTGATCCAAGCACTGTATTAGGAGGCTTCTCTGGGACCAATTATTCAGAGGCATCTGCTTTTATTATAACTTATCCGGTAAATAATGCTATTAATGAAGAAGGGAATGCAACTGCAAAGGCAGTCGCTTGGGAGAAGGCCTTTATCCAGTTGGTGAAGGATGAGCTGTTGCCAATGGTGCAAACTAAAAATTTGACACTTGCCTTTTCATCTGAGAGCTCCATTGaggaagaattaaaaagagaaagtaGTGCTGATGCCATTACTATATTGATAAGCTATATTGTGATGTTTGCTTATATATCTCTTACTTTGGGGGATACACCATATTCTTCTTCATTCTACATTTCATCTAAGGTATTGCTTGGTCTTTCAGGAGTAATGCTTGTTATGCTGTCTGTCCTTGGATCAGTTGGATTTTTCAGTGCCATTGGTGTAAAATCTACACTGATCATTATGGAAGTTATTCCATTTCTTGTTCTCGCTGTTGGGGTAGATAATATGTGTATATTAGTTCATGCTGTGAAAAGGCAACAACTGGAGTTGCCTTTAGAAGGACGAATAAGCAATGCACTTCTGGAAGTTGGACCATCCATAACATTAGCTAGTCTATCAGAGGTTTTAGCATTTGCAGTTGGAACTTTTATTCCTATGCCTGCATGCCGGGTATTCTCCATGTTTGCAGCATTGGCTGTGCTTTTGGACTTTCTTCTGCAAGTTACTGCCTTTGTTGCCCTGATAGTTCTTGACTTTTTGCGAGCGGAGGATAGGAGACTTGATTGTTTCCCATGCATAAAAGTATCTTCATTGCATGCTGACACTGATAAAGGTATTGAACAGCAAAAACCTGGCATATTGGCTCGATATATGAAGGAGGTTCATGCTCCCATTCTGAGTATTTGGGGAGTAAAAATAGTTGTGATAGCTATTTTTGTGGCATTTGCATTGGCTAGCATTGCATTATGCACTAGAATTGAACCTGGTTTAGAGCAGAAGATTGTTCTACCCCGAGACTCATATCTTCAGGGATATTTCAATAATGTTTCACAGCATCTCAGAATTGGACCACCTTTGTACTTTGTTGTAAAAAACTATAACTACAGCTCAGAATCAAGGCATACAAATCAATTGTGCTCAATCAGCCAATGTGATTCAGACTCTCTGTTGAATGAGATTGCAAGGGCATCCCTAGAACCAGAATCAAGTTATATTGCCAAGCCTGCTGCTTCATGGCTTGATGATTTTCTTGTGTGGATATCTCCAGAAGCATTTGGATGCTGCAGGAAGTTCACAAATGGGAGTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGTGCTTCTGATGAAGGTTCTTGTCGCACAGTTGGAGTATGCAAAGATTGCACAACGTGTTTCCGTCACTCAGAACTTCATAATGATCGTCCTTCTACCAAACAATTTAAGGAGAAATTGCCATGGTTTCTCAATGCTCTACCATCTGCTGATTGTGCAAAAGGTGGTCATGGGGCTTACAGCAGTAGTGTTGACTTGGAAGGTTATGACAGTGGCATTATCCAAGCATCATCATTCCGTACATATCATACTCCACTAAACAAACAGATTGACTACGTTAATTCCTTGAGGGCTGCTCGGAAGTTCAGTTCAAAAGTCTCTGACGCTTTAAAGATTGAGATCTTCCCATATTCAGTGTTCTATATGTTTTTTGAGCAATACCTTGATATATGGAAGACTGCACTGATCAACCTCGCTATAGCAATTGGTGCAGTATTTGTTGTGTGCCTGGTTATCACATGCAGTTTATGGTGTTCAGCAATCATTTTGTTGGTGTTGGCGATGATTGTCGTTGATCTTATGGGTGTGATGGCAATTTTGGACATCCAGTTGAATGCAGTCTCTGTTGTCAACCTTGTTATGTCAGTGGGCATCGCTGTTGAGTTTTGTGTTCATATGACTCACGCCTTTGCTGTAACAAGTGGAGACAAAGAACAACGCGCTAAGGAGGCTCTGGGTACAATGGGAGCGTCAGTCTTCAGGTGA 3666 0.398 MALRLGFLLSISLFQVFLILSLVQAQNFAARLLLTSNATTLGERRSEDYCAMYDICGQRSDGKVLNCPFGSPAVKPSDLLSSKIQSLCPTITGNVCCTEAQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTKVAKVGDNLTVNGIDYYITDGFGEGLYESCKEVKFGTMNSRVIQYIGAGAKNFTDWFKFIGTEAPLGVPGSPYAITFLPNAPESSGMRPMNVSTYSCGDISLGCSCGDCPSSSACSNIASTTIQKKDSCSLRIGSLMVKCVDLILAILYIILISVFLGWGLFYRIRERKAASTTKPVSNVVNGTVLHSLDMQKDENLPMQMLENAPQIRNGVKLSAVQGYMSNFYRKYGSYVARNPIMVLSSSIAIVLLLCLGLIRFKVETRPEKLWVGPGSKAAQEKQFFDSHLAPFYRIEQLILATIPDHVNGISPNIVSENNIKFLFEIQKKVDAVRGNYSGLMVSLHDICMKPLDQNCATQSVLQYFKMDAGNFDNYGGVEHLYYCFEHYSSADQCMSAFKGPLDPSTVLGGFSGTNYSEASAFIITYPVNNAINEEGNATAKAVAWEKAFIQLVKDELLPMVQTKNLTLAFSSESSIEEELKRESSADAITILISYIVMFAYISLTLGDTPYSSSFYISSKVLLGLSGVMLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLEGRISNALLEVGPSITLASLSEVLAFAVGTFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIVLDFLRAEDRRLDCFPCIKVSSLHADTDKGIEQQKPGILARYMKEVHAPILSIWGVKIVVIAIFVAFALASIALCTRIEPGLEQKIVLPRDSYLQGYFNNVSQHLRIGPPLYFVVKNYNYSSESRHTNQLCSISQCDSDSLLNEIARASLEPESSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCASDEGSCRTVGVCKDCTTCFRHSELHNDRPSTKQFKEKLPWFLNALPSADCAKGGHGAYSSSVDLEGYDSGIIQASSFRTYHTPLNKQIDYVNSLRAARKFSSKVSDALKIEIFPYSVFYMFFEQYLDIWKTALINLAIAIGAVFVVCLVITCSLWCSAIILLVLAMIVVDLMGVMAILDIQLNAVSVVNLVMSVGIAVEFCVHMTHAFAVTSGDKEQRAKEALGTMGASVFR 1221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto5g0042 1221 Pfam Niemann-Pick C1 N terminus 48 280 IPR032190 -
Sto5g0042 1221 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1084 1220 - -
Sto5g0042 1221 TIGRFAM 2A060601: Niemann-Pick C type protein family 50 1220 IPR004765 GO:0005319|GO:0016021
Sto5g0042 1221 Gene3D Multidrug efflux transporter AcrB transmembrane domain 588 800 - -
Sto5g0042 1221 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 585 792 - -
Sto5g0042 1221 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 6 1220 - -
Sto5g0042 1221 PANTHER PATCHED FAMILY PROTEIN 6 1220 - -
Sto5g0042 1221 Pfam Patched family 1054 1220 IPR003392 GO:0016021
Sto5g0042 1221 Pfam Patched family 422 907 IPR003392 GO:0016021
Sto5g0042 1221 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1081 1221 - -
Sto5g0042 1221 ProSiteProfiles Sterol-sensing domain (SSD) profile. 629 792 IPR000731 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto5g0042 Sto-Chr5 273469 287185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto5g0042 44 1220 Miscellaneous Gene Families AT1G42470 74.511 0.0 1787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto5g0042 K12385 - gmx:100813262 2021.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto5g0042 5 273469 287185 Sto5g0042 5 273469 287185 ECH