LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto5g0031	ATGGGCACCAACGCAGCTCTAGCTTCTACGAGAATCCCGGGCAACACAAGGCTTTCATCCAAGCCCTCTTTCCCCACTCAATGCGCCTCTAAGAGAGTGGAGGTGGCCCAGTTCTGTGGGCTAAGATCCACTTCATGCCTCACCTATGCTTCACACTCCTCCTTCTTTGATGTGGTGGCTGCTCAACTGAGTCCCCAGGCCCAGGGATCAATATCAAATGGTGTGACGGTGGCGAAATTGAAGGTAGCGATCAATGGTTTTGGACGCATCGGGAGGAACTTCCTGCGGTGCTGGCATGGGCGAAAAGACTCTCCCCTGGAAGTGGTTGTAGTGAACGACAGCGGAGGCGTGAAGAATGCTTCTCACTTGCTCAAGTATGATTCTATGCTGGGAACTTTCAAAGCGGATGTGAAAATAGTAAACGAGGAGACGATCAGTGTTGATGGGAAGGCCATCAAGGTAGTGTCGAGCAGGGATCCTCTGAAGTTGCCTTGGGCGGAACTTGGAATAGACATTGTTATTGAGGGAACGGGAGTGTTCGTGGATGGGGCTGGGGCTGGGAAACACATCCAAGCAGGCGCTAAGAAAGTTATTATTACTGCTCCTGCCAAGGGTGCGGATATTCCAACCTATGTTGTTGGGGTGAATGAGCAGGGTTACGACCATCATGTAGCCGACATTATAAGCAATGCTTCCTGCACCACCAACTGCCTTGCTCCTTTCGTGAAGGTGCTGGACGAAGAGTTCGGGATTGTGAAGGGGACGATGACGACGACCCACTCGTACACCGGAGACCAGAGGCTTCTGGACGCTTCCCACAGGGACTTGAGGCGTGCTCGTGCTGCAGCACTGAACATAGTGCCGACGAGCACAGGAGCAGCGAAGGCGGTGTCTCTGGTACTTCCTCAGCTGAAGGGGAAGCTGAATGGAATAGCATTGCGTGTGCCCACTCCAAATGTATCGGTGGTGGACCTTGTGGTGAATGTTGAGAAGAAGGGCATCTCGGCGGAGGACGTGAATGCAGCCTTCAGAAAGGCCGCGGAGGGCCCACTCAAGGGCATTCTGGAGGTCTGTGATGTTCCCCTCGTCTCCGTTGACTTCCGCTGCACCGATGTGTCTTCCACCATCGACTCCTCCCTCACCATGGTCATGGGAGATGATATGCTCAAGGTCGTTGCTTGGTATGACAACGAGTGGGGCTACAGTCAGAGAGTCGTCGATTTGGCACATTTGGTCGCTGCTAAGTGGCCAGGCTCAGCCTCAGCCTCAGCCTCAGACCCTTTGGAGGATTTCTGCCAAACAAACCCTGCTGATGAGGAGTGCAAAGTTTATGAAGCTTAA	1341	0.5339	MGTNAALASTRIPGNTRLSSKPSFPTQCASKRVEVAQFCGLRSTSCLTYASHSSFFDVVAAQLSPQAQGSISNGVTVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVNEETISVDGKAIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGAGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQGYDHHVADIISNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGISAEDVNAAFRKAAEGPLKGILEVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLAHLVAAKWPGSASASASDPLEDFCQTNPADEECKVYEA	446

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto5g0031	446	Gene3D	Dihydrodipicolinate Reductase; domain 2	232	397	-	-
	Sto5g0031	446	TIGRFAM	GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I	81	407	IPR006424	GO:0006006\|GO:0016620\|GO:0050661\|GO:0051287
	Sto5g0031	446	Pfam	CP12 domain	421	445	-	-
	Sto5g0031	446	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	189	202	IPR020831	GO:0016620
	Sto5g0031	446	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	227	245	IPR020831	GO:0016620
	Sto5g0031	446	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	254	270	IPR020831	GO:0016620
	Sto5g0031	446	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	310	327	IPR020831	GO:0016620
	Sto5g0031	446	PRINTS	Glyceraldehyde-3-phosphate dehydrogenase signature	351	366	IPR020831	GO:0016620
	Sto5g0031	446	SUPERFAMILY	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	233	396	-	-
	Sto5g0031	446	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain	238	395	IPR020829	GO:0016620
	Sto5g0031	446	Gene3D	-	81	409	-	-
	Sto5g0031	446	ProSitePatterns	Glyceraldehyde 3-phosphate dehydrogenase active site.	231	238	IPR020830	GO:0016620
	Sto5g0031	446	Pfam	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain	81	182	IPR020828	GO:0051287
	Sto5g0031	446	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	79	249	IPR036291	-
	Sto5g0031	446	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2	1	446	IPR020831	GO:0016620
	Sto5g0031	446	PANTHER	GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPB, CHLOROPLASTIC	1	446	-	-
	Sto5g0031	446	SMART	gp_dh_n_7	80	233	IPR020828	GO:0051287

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto5g0031	Sto-Chr5	203298	205050	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto5g0031	K05298		-	gmx:732571	738.799

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto5g0031	5	203298	205050	Sto5g0031	5	203298	205050	ECH