LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto4g2896	ATGGCGAACTTCCTAGCTCAGTTCCAGACAATTAAGAATACCTCCGATCGCCTCGTAATCGCGGTGGAAGATGTGAGTGACTTGTGGCCCACTATCAAGACTGCATTTGAGGAACGATTGCCATTCAAAAGAGCTTGTTTAAATAACAAGACGCGGAATCCTGTCTTTGTTGAGACTTTGCCAGCTGAGTTCATTTTAACAACAGACTCAAGACTTCGTAGCCGGTTCCCTCAGGagcaattattattttggtttcgAGAGCCCTATGCAACTATTGTGCTTGTAACCTGTGAGGACCTTGACGAGTTCAAAACCATCCTAAAACCACGCCTGAAATTGATTGTTCAAAATGATGATAGGGAATGGTTTATTGTATTTGTGTCTAAAGCTCATCCAAATAATGATCAAGCAAGCAAAATGGCAAAGAAAGTATATGCTAAACTTGAAGTTGACTTTAGCTCCAAAAAGAGGGAAAGGTGCTGCAAATTTGATATGCTTTGTCCTGAACCAAATTTTTGGGAAGATCTGGAATCAAAGATAACAGAATGCGTCCGAAATACGCTGGATAGGCGTGTACAGTTCTATGAGGATGAGATACGGAAGCTCAGTGAACAACGCCTCATGCCAGTGTGGAACTTCtgtaattttttcattttgaagGAGAGCTTAGCTTTTATGTTTGAAATGGCTAACCTTCATGAAGATGCCTTACGGGAATATGATGAGCTAGAACTCTGCTATCTTGAGACAGTAAACATGACTGGGAAGCAAAGGGACTTTGGAGGAGTAGACCAAGGTGATGATCAGGCAGCATTGGTTAATCCAGGAAACAAAGCATTGACACAGATTGTTCAAGATGATTCATTTAGGGAATTTGAATTTAGACAATATCTGTTTGCCTGTCAATCAAAGCTCTTATTTAAGCTAAATCGCCCTGTTGAGGTTGCATCACGTGGGTATTTATTCATAATAAGCTTCTCAAAATCCTTGGCATTGCATGAGAGTATTCTGCCATTCTGCACGCGTGAAGTTTGGGTGATAACCGCTTGCTTGGCTTTAATTGATGCAACCACATCTCATTATAATGAAGGACTTGCGGCACCTGAAATTGAAAAGGAGTTCTATCGCCTTCTAGGTGATCTCTATTCACTAGCCAGAGTTAAGTTCATGAGGCTTGCCTATTTAGTTGGGTATGGAAGTGACATAGAAAGAAGTCCTGTCAACAGTGCTTCCCTCAGCTTGCTACCTTGGCTGATTGAGAAAGAAAAGTTGATTCTTCAAACAACTCCTAGAGCCAAGCACTTTGGTATCCAGAGGAAACCCTTGCCTCTTGAACCTACTGTGCTTCTGCGAGAGGCTAACAGGCGTAGGGCTTCTCTTTCAGCTGGAAATATGTTTGAAATGTTGGATGGTCGCCCTGGTACAATTGATGGATCAGGTTTGGATGCATCCCCAAGGATGTCACCATCACAAAAAGTACGGGCAAGTTCCATGTCACGTACTAATTCTTCACCAGGAAACTTTGATAGCTCAGTTGACCGACCTATGAGACTTGCTGAGATTTATATAGCTTCTGAGCACGCTTTGAAGCAAACTATTTCTAACACGGAACTATTGAAATCACTATCTTCTCTGGAGGAGTTCGAGCAAAAATATTTGGAGCTAACTAAAGGTGCTGCTGACAATTATCATCGCTCCTGGTGGAAAAGACATGGAGTTGTCCTTGACGGAGAGATAGCAGCTGTCTCCTTTAAGCATGCACATTTTGATCAAGCTGCAAAGTCATATGAAAAGGTGTGTGCTTTATATGCTGCTGAAGGATGGCAGGACTTGTTGGCTGAGGTCCTTCCCAATTTAGCTGAGTGTCAGAAGATCCTTAATGATCAAGCTGGTTACTTGTTATCTTGTGTGAGATTACTTTCTCTTGATGGAAGATTATTTTCAACCAAGGAGCGTGAAGCTTTTCAGTCAGAAGTTGTTCGCCTTGCTCATAGTGAAATGAAAGACCCTGTACCCCTTGACGTGTCTTCATTAATTACATTTTCTGGAAACCCTGGGCCTCCATTGGAGTTATGTGATGGCGATCCTGGTACCCTTTGTGTAACTATATGGAGTGGTTTTCCAGATGATATAACTCTTGATTCAATCAGTCTCACATTAATGGCAACGTATAATGCTGATGAAGGCATAAAGGCATTAAAGAGTTCTTCAGCTATTGTTCTACACCCTGGTCGGAATACTATTACCTTGGATCTACCACCCCAAAAGCCAGGATCATATGTCCTGGGAGTTCTTACTGGGCAGATTGGACAGTTAAGGTTCAGATCTCATAGTTTTTCCAAAGTTGGTCCTGCAGACAGTGATGATTTTATGAGTTATGAAAAGCCTGCTAAACCCATTTTGAAGATTTTCAAACCAAGGGCCCTCGTTGATCTTGATGCGGCCTTTTCTTCTGCTTTGTTGATTAATGAACATCAATGGCTTGGAATATTAGTACGACCAATAAACTACTCCCTCAAAGCTGCTATCTTGCATATTGATACTGGTCCAGGCTTGGAGATTGAGGATTCACATGTGATTGAGATGGAAAGTTATGCTCAGAATGAAGATGACCAGGCTCAGGCTGATGGTGCTAAGAAAGGATCATTAAATTCTGAGAAAAAATTTGAGTGTTTGAGTCtaaaagataggaaaatagagtTTCCAGATTGGGCAAGTGATATTCCTTCTATTCTTTGGGTTCCAATTCGTGCTATTGGCGATGAGATCAGCAGAAGTTCATCTTCAGCCGCAACTAGGAGACAGAGCATTGTGGATGGAATGAGAACAGTAGCACTGAAACTTGAGTTTGGAGTATCCCACAATCAGATATTTGAGAGGACTTTGGCAGTGCATTTTACAGATCCTTTCTATGTGATGACACGCGTTACAGATAAATGTCATGATGGCACCCTCCTTCTACAGGTTACACTACACTCTGAAGTAAAGGCTACTTTGACCATATATGATGCTTGGCTTGATCTTCAAGATGGATTTGTTCATACTGATGGTGGTATTCCAACTTCAAGCTTCTTTCCACTAGTTATATCTCCTTCTTCCAAAGCAGgaattttatttagtatatgCCTAGACAAGGCAAATGTGGAAGAAGCAAATAGGGGGTTACCAGAAAGCATCTTAAACATTAAATATGGGATTTCTGGTGATAGAACCATTGGAGCCCACCAACCTGCCTTGAATCAATCAATCGGAGCTCACAGTGCCAGTCAGGATTTGATCTTCAGGAGTGCAATTACTTTGCAGAGGCCTGTGCTTGATCCATGCTTAGCTGTTGGTTTTCTTCCTCTCCCTTCAAATGGCCTAAGAGTTGGACAGCTCATTACAATGAAATGGAGGGTTGAAAGGTTAAAGGATTTGGATGAAATAGAAGTTTCCAAGCACAATGATGAGGTGATGTACGAGGTAAATGCAAATTCTGAGAGTTGGATGATAGCTGGGAGGAAAAGAGGGCATGTCTCTCTCTCAACAAAACAAGGTTCAAGGATAGTTATCTCAATATTATGCATGCCACTGGTAGCTGGCTACGTTCGTCCTCCTCAACTTGGACTGCCAGATATCGACGAAACAAATATAAGCTGCAAACCAGCTGGGCCACATCTGGTCTGTGTGTTGCCTCCCGCTCTCAGCTCATCCTTCTGCATTCCAGTTAGTTCATGA	3717	0.4143	MANFLAQFQTIKNTSDRLVIAVEDVSDLWPTIKTAFEERLPFKRACLNNKTRNPVFVETLPAEFILTTDSRLRSRFPQEQLLFWFREPYATIVLVTCEDLDEFKTILKPRLKLIVQNDDREWFIVFVSKAHPNNDQASKMAKKVYAKLEVDFSSKKRERCCKFDMLCPEPNFWEDLESKITECVRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMANLHEDALREYDELELCYLETVNMTGKQRDFGGVDQGDDQAALVNPGNKALTQIVQDDSFREFEFRQYLFACQSKLLFKLNRPVEVASRGYLFIISFSKSLALHESILPFCTREVWVITACLALIDATTSHYNEGLAAPEIEKEFYRLLGDLYSLARVKFMRLAYLVGYGSDIERSPVNSASLSLLPWLIEKEKLILQTTPRAKHFGIQRKPLPLEPTVLLREANRRRASLSAGNMFEMLDGRPGTIDGSGLDASPRMSPSQKVRASSMSRTNSSPGNFDSSVDRPMRLAEIYIASEHALKQTISNTELLKSLSSLEEFEQKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVSFKHAHFDQAAKSYEKVCALYAAEGWQDLLAEVLPNLAECQKILNDQAGYLLSCVRLLSLDGRLFSTKEREAFQSEVVRLAHSEMKDPVPLDVSSLITFSGNPGPPLELCDGDPGTLCVTIWSGFPDDITLDSISLTLMATYNADEGIKALKSSSAIVLHPGRNTITLDLPPQKPGSYVLGVLTGQIGQLRFRSHSFSKVGPADSDDFMSYEKPAKPILKIFKPRALVDLDAAFSSALLINEHQWLGILVRPINYSLKAAILHIDTGPGLEIEDSHVIEMESYAQNEDDQAQADGAKKGSLNSEKKFECLSLKDRKIEFPDWASDIPSILWVPIRAIGDEISRSSSSAATRRQSIVDGMRTVALKLEFGVSHNQIFERTLAVHFTDPFYVMTRVTDKCHDGTLLLQVTLHSEVKATLTIYDAWLDLQDGFVHTDGGIPTSSFFPLVISPSSKAGILFSICLDKANVEEANRGLPESILNIKYGISGDRTIGAHQPALNQSIGAHSASQDLIFRSAITLQRPVLDPCLAVGFLPLPSNGLRVGQLITMKWRVERLKDLDEIEVSKHNDEVMYEVNANSESWMIAGRKRGHVSLSTKQGSRIVISILCMPLVAGYVRPPQLGLPDIDETNISCKPAGPHLVCVLPPALSSSFCIPVSS	1238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto4g2896	1238	Pfam	Trafficking protein particle complex subunit 10, TRAPPC10	1119	1201	IPR022233	-
	Sto4g2896	1238	PANTHER	BNAC09G30770D PROTEIN	1	1236	-	-
	Sto4g2896	1238	MobiDBLite	consensus disorder prediction	477	510	-	-
	Sto4g2896	1238	MobiDBLite	consensus disorder prediction	484	510	-	-
	Sto4g2896	1238	PANTHER	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1	1	1236	IPR045126	GO:0048193\|GO:1990071
	Sto4g2896	1238	Coils	Coil	185	205	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto4g2896	K20307		-	gmx:100787264	2116.66

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto4g2896	4	29545569	29558584	Sto4g2896	4	29545569	29558584	ECH