Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2887 ATGGCCATGAACTTGCAAGGCAGAATGTTAAGGCCTCATAATCAAATTCAGAGGCCAAGCTTAGGAAAAGggccaccatcatcatcatgtgATGTGTTCATAAACCACAGAAGCACAGACACAAAAAGAACAGTGGCCACTTTGCTTTATGACAACCTTCGGATTCTAGGGTTTTGTCCTTTCTTGGACAACAAGACCATGAAGCCAGGTGACAAATTGTTCCACAAAATCAATGATGCTATTTTGGAGTGTAAGGTTGGTGTTGCTGTCTTCTCTCCTCGCTATTGTGACTCCTACTTCTGTCTCCATGAATTGGCCCTCCTTCTGGACTCCAACAAGAAGCTCATCCCTATTTTTTGTGACGTCAAGCCCTCTCATCTCCGTGTCGTCAACAACGGCAGGTGGCGGCCGCCGTGGGACCCGGAGGATGTCCGGCGCTTCGAAGCCGCACTTGAAGAGGCCAAATACACCGTGGGCATCACCTTCAATTCCTCTAACGGGAATTTCTCCGATGTTGTGAATAGTGCTTCTGATATCATCATCAACACCCTTATAGAGCTGGAGGATGAAGAAGAGCATAACTTGCCAATTgctAGAGGATCGGAGATGGGTGATATTGAGTCTCAAACAATTAGCAATAATAAAGCAGCTCCTCGCATCTTCCAAAGCAACAATCGTCCTGTTACTCTCAAGTTTGAGAATGTTGTTTACAAAATCAAGCCCAAGGAGCAACAAGGATTTATGTCAAAGAGAAGAAAGCAAACAGAAGAGAAAGTGATCCTCAAGGGAGTATCCGGCATGGTTGAACCAGGCGAAATTCTAGCCATGCTCGGTCCCTCCGGAAGTGGCAAGACCACACTTCTAACCGCCTTGGGCGGTCGGCTCGGGCACGAAGGCTCCATAACCTACAACGGCTTGCCATTCTCCAATGCAATGAAGCGAAACACGGGCTTTGTCACCCAAGATGATATTCTCTACCCACACTTAACCGTCTCGGAAACCCTAATTTTCACGGCGCTTCTTAGACTTCCtaatagtttgaccaaaaatgagaaaattttgCAAGCAGAAAATGTGATAAGACAACTAGGGTTATCCAGGTGTAAAGACAACATCATAGGAGGGTATTTGGTGAGAGGGATTTCTGGGGGAGAGAGGAAGAGGGTTAGTATTGGACAAGAAATGCTTGTAAACCCTAGCTTGCTTCTTTTGGACGAGCCCACGTCCGGGCTGGACTCGACCACGGCTCAGAGGATCATGTCGTGCTTGTGGGAGGTGGCCAAGGGAGGGAGGACGGTGGTGATGACTATACACCAACCCTCAAGTAGGTTGTATTATATGTTTCATAAGGTCTTGTTGCTATGTGAAGGAAATTGTTTGTACTTTGGAAAGGGAAGTGATGCCATCAATTACTTTTCTAGTATTGGATTTTGCCCTAAAGTTGCCATGAACCCttcagattttcttttggatCTTGCAAAcgGCGTGTACTCTAATGAATCGGAAGAAGATCATGGGTCAGTTAAGCAGAAATTGATTGGTGAGTATAAGAAGAGAATTGATCCCCAATTGAAAGCTATGCTTCACGATGAAGTAGTGGAAGATTGTGATCATGGAAGTGATGAGGTTGATAGAAATAAAGAGATAAGAGAATATGGAAGATGGCCTACATCATGGAGGCAGCAATTCTGTGTGTTGCTTAGAAGAGGAGTGAAAGAGAGAAGACATGAATCATTCTCAGGCCTCAGGATTGCTCAAGTGATCGTGGTCGCCGTCTTCGCCGGACTTCTTTGGTTTAAGTCCGATACTTCGCACTTGCAAGATCAGGGGCAAGGGCAGTGTTTGGTTGCGGAGTTTCCTAGTATCAAGCAAATTGGGATTGGCTTGAAGGGGCAAGTTGTGGCGGCTGTGGCTCTAGGGATAATGCTTGTAGCTTATAGACTTGTGGCTTATTTTGCTCTTATGAGGATTGGGGTCACAAAGAAATTGGCTTAG 1995 0.4426 MAMNLQGRMLRPHNQIQRPSLGKGPPSSSCDVFINHRSTDTKRTVATLLYDNLRILGFCPFLDNKTMKPGDKLFHKINDAILECKVGVAVFSPRYCDSYFCLHELALLLDSNKKLIPIFCDVKPSHLRVVNNGRWRPPWDPEDVRRFEAALEEAKYTVGITFNSSNGNFSDVVNSASDIIINTLIELEDEEEHNLPIARGSEMGDIESQTISNNKAAPRIFQSNNRPVTLKFENVVYKIKPKEQQGFMSKRRKQTEEKVILKGVSGMVEPGEILAMLGPSGSGKTTLLTALGGRLGHEGSITYNGLPFSNAMKRNTGFVTQDDILYPHLTVSETLIFTALLRLPNSLTKNEKILQAENVIRQLGLSRCKDNIIGGYLVRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIMSCLWEVAKGGRTVVMTIHQPSSRLYYMFHKVLLLCEGNCLYFGKGSDAINYFSSIGFCPKVAMNPSDFLLDLANGVYSNESEEDHGSVKQKLIGEYKKRIDPQLKAMLHDEVVEDCDHGSDEVDRNKEIREYGRWPTSWRQQFCVLLRRGVKERRHESFSGLRIAQVIVVAVFAGLLWFKSDTSHLQDQGQGQCLVAEFPSIKQIGIGLKGQVVAAVALGIMLVAYRLVAYFALMRIGVTKKLA 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2887 664 CDD ABCG_EPDR 227 463 - -
Sto4g2887 664 ProSiteProfiles TIR domain profile. 28 155 IPR000157 GO:0007165
Sto4g2887 664 Pfam ABC-2 type transporter 438 506 IPR043926 GO:0140359
Sto4g2887 664 ProSitePatterns ABC transporters family signature. 381 395 IPR017871 GO:0005524
Sto4g2887 664 Pfam ABC transporter 261 409 IPR003439 GO:0005524
Sto4g2887 664 SUPERFAMILY Toll/Interleukin receptor TIR domain 27 129 IPR035897 -
Sto4g2887 664 Gene3D - 248 474 IPR027417 -
Sto4g2887 664 SMART AAA_5 270 456 IPR003593 -
Sto4g2887 664 Pfam TIR domain 32 127 IPR000157 GO:0007165
Sto4g2887 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 475 IPR027417 -
Sto4g2887 664 Gene3D - 9 136 IPR035897 -
Sto4g2887 664 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 214 609 - -
Sto4g2887 664 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 214 609 - -
Sto4g2887 664 SMART till_3 29 161 IPR000157 GO:0007165
Sto4g2887 664 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 230 481 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2887 Sto-Chr4 29463077 29471079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2887 14 160 Miscellaneous Gene Families AT1G57830 30.818 3.67e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2887 K05681 - ini:109187339 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2887 4 29463077 29471079 Sto4g2887 4 29463077 29471079 ECH