Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2750 ATGGCTACGCATACTCCAAAGAATATCCTCATCACCGGAGCAGCCGGATTTATTGCATCTCATGTTGCCAACCGGCTTATTCGGAACTATCCTGAATACAAAATTGTGGTGCTTGACAAACTTGATTACTGTTCTAATTTGAAGAACCTCTTTCCTTCAAAATCATCTCCCAACTTCAAGTTTGTGAAGGGTGACATTGGAAGTGCTGACCTTGTCAACTACCTTCTCATAACCGAGTCCATTGACACAATCATGCACTTTGCTGCCCAGACCCACGTTGACAATTCATTCGGTAATAGCTTTGAGTTCACCAAGAACAACATATATGGTACTCACGTCCTATTAGAAGCCTGCAAGGTCACTGGCCAGATCAAAAGGTTCATTCATGTGAGCACAGATGAGGTCTATGGGGAGACCGATGAGGATGCTGTTGTTGGAAATCATGAGGCTTCTCAACTTCTTCCTACAAACCCATACTCTGCAACGAAAGCTGGAGCAGAAATGCTTGTCATGGCATATGGTAGGTCATATGGGTTACCTGTTATCACGACTCGAGGAAACAATGTTTATGGGCCCAATCAGTTTCCTGAGAAGTTAATTCCTAAGTTCATCCTCTTGGCCATGCAAGGAAAGCCTCTTCCTATTCATGGGGATGGTTCTAATGTAAGGAGTTATTTGTATTGTGAAGATGTTGCTGAGGCTTTTGAAGTTATCCTTCACAAGGGAGAGGTTGGTCATGTTTATAACATTGGGACTAAGAAGGAAAGGAGAGTTATTGATGTAGCCAAAGATATATGCAGACTTTTCTCTAAGGACCCAGAGACTTGTATAAAATTTGTAGATAACCGACCATTCAACGACCAGAGGTACTTTCTGGATGATCAAAAGCTGAAGAACTTGGGTTGGTCTGAGAGGACCACCTGGGAAGAGGGTTTGAAGAAAACCATGGAGTGGTATATCAAGAACCCGGAATGGTGGGGTGATGTCAGTGGAGCATTGCTTCCTCATCCAAGGATGCTGATGATGGCTGGTGGAATGGAGAGACTTTTAGATGGGTCTGAAGAGGAAACACTAGAATCCTACGTCTCAACTAATCCTCGAATGGTTGTTCCATCACAAAAGAGCCCTAATGGTCAGCAGAAACATCCTTTCAAGTTCTTGATCTATGGTAGAACAGGGTGGATCGGGGGCCTGCTAGGGAAACTATGTGAAAAGCAAGGGATTCCATATGAATATGGAAGAGGTCGCCTACAGGATCGTGCATCACTATTGGCTGATATTCAGAATGTGAAGCCAACTCATGTTTTTAATGCTGCTGGAGTCACAGGAAGACCTAATGTTGATTGGTGTGAATCTCATAAAACAGAAACCATCCGCACCAATGTTGCTGGGACTTTAACATTGGCTGATGTCTGCAGAGAGCACGGGCTCTTGGTGATAAACTATGCTACCGGGTGTATATTCGAGTATGATGCAGGACATCCAGAGGGTTCTGGCATTGGATTTAAGGAGGAAGACAAACCCAATTTCATTGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAAGAGCTTTTGAAAGAATTTGACAATGTCTGCACCCTTAGGGTTCGCATGCCGATTTCATCCGATCTGAATAACCCACGCAACTTCATTACCAAGATCTCCCGTTATAACAAAGTGGTTAACATTCCAAACAGCATGACCATCTTGGATGAACTTCTGCCTATTTCCATTGAGATGGCGAAGCGAAACTTGAGGGGCATCTGGAACTTCACAAACCCTGGAGTTGTGAGCCACAATGAGATCCTTGAGATGTACAGAGACTACATCGAGCCCGGCTTCAAGTGGACCAACTTCACACTGGAAGAGCAAGCCAAGGTCATCGTTGCTCCCCGAAGCAACAACGAGATGGATGCATCGAAATTGAAGAAGGAATTCCCTGAGTTGCTTACCATAAAAGAATCACTGATCAAGTATGTTTTCGAGCCGAACAAGAAAAGTGGTACAAAATAA 2016 0.438 MATHTPKNILITGAAGFIASHVANRLIRNYPEYKIVVLDKLDYCSNLKNLFPSKSSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAKDICRLFSKDPETCIKFVDNRPFNDQRYFLDDQKLKNLGWSERTTWEEGLKKTMEWYIKNPEWWGDVSGALLPHPRMLMMAGGMERLLDGSEEETLESYVSTNPRMVVPSQKSPNGQQKHPFKFLIYGRTGWIGGLLGKLCEKQGIPYEYGRGRLQDRASLLADIQNVKPTHVFNAAGVTGRPNVDWCESHKTETIRTNVAGTLTLADVCREHGLLVINYATGCIFEYDAGHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLKEFDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGVVSHNEILEMYRDYIEPGFKWTNFTLEEQAKVIVAPRSNNEMDASKLKKEFPELLTIKESLIKYVFEPNKKSGTK 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2750 671 Gene3D - 200 322 - -
Sto4g2750 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 379 646 IPR036291 -
Sto4g2750 671 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 667 - -
Sto4g2750 671 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Sto4g2750 671 Gene3D - 9 313 - -
Sto4g2750 671 Pfam RmlD substrate binding domain 385 555 IPR029903 -
Sto4g2750 671 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 667 - -
Sto4g2750 671 CDD dTDP_HR_like_SDR_e 385 657 - -
Sto4g2750 671 Gene3D - 374 671 - -
Sto4g2750 671 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 333 IPR036291 -
Sto4g2750 671 TIGRFAM dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 8 328 IPR005888 GO:0008460|GO:0009225
Sto4g2750 671 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2750 Sto-Chr4 28474891 28476990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2750 8 320 Miscellaneous Gene Families AT4G00110 26.727 3.63e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2750 K12450 - gmx:100775641 1274.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2750 4 28474891 28476990 Sto4g2750 4 28474891 28476990 ECH