LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto4g2655	ATGGGAAGCCTCACGGAGGACGGGAAATCCCCCAAGCTTCCTATTCCCGGCAAGCGCAACGTCCTCATCACAAGTGCTTTGCCTTACGTCAACAACGTTCCTCATCTCGGCAACATCATTGGATGTGTGTTGAGTGCGGATGTCTTTGCTCGTTATTGCCGTCTTCGGGGCTACAATGCCATTTACATCTGTGGGACTGATGAGTACGGGACTGCAACAGAGACTAAAGCCATGGAAGAGAAATGCTCTCCTAAAGAGATTTGTGATAAATATCATGCTATTCATAAGCAGGTCTACGATTGGTTCAATATAAGTTTTGATGAATTTGGACGGACATCATCCCCACAGCAAACTGAAGTTTGTCAAGCaatctttaagaaaatattGGAGAACAACTGGCTCTCAGAGAACACAATGCAGCAGCTTTACTGTGATACATGCGAAAGATTCTTAGCTGACCGACTTGTGGAAGGTATCTGTCCAACTCCAGGGTGCGAGTATGATTCTGCCCGTGGAGATCAATGTGAGAAGTGTGGCAAGCTTTTGAATCCAACAGAGTTGAGAAGTCCCAGGTGCAAGGTTTGTCAAAGATCTCCACGCATACGTGATACAAACCACTTGTTTCTTGAACTCCCTCTGTTAAAAGATAAGTTGGAAAAATATATCAATGAGATGTCAGTGGCTGGCTCGTGGAGTCAGAATGCTGTCCAGACAACAAATTCTTGGCTCAGAGAAGGATTAAAGGCACGATGTATTACCAGGGATCTGAAGTGGGGAGTTCCAGTTCCACATGAGAAATACAGGGACAagGTTTTCTATGTTTGGTTTGATGCACCTATTGGATATGTCTCAATCACTTCATGTTACACATCTGATTGGGAGAAATGGTGGAAGAACCCAGAGAATGTGGAGCTTTATCAGTTTATGGGCAAAGACAATGTGCCATTCCACACTGTGATGTTCCCTTCTACTCTACTTGGAACTGGTGAAAATTGGACTTTAATGAAGACTATTAGTGTTACTGAATACTTGAATTATGAAGCAGGGAAGTTTTCCAAAAGCAAAGGCATTGGGGTATTTGGTAATGATGCTAAAGATACTAATATTCCAGTGGAAGTATGGCGATATTACTTGCTAACCAATAGGCCTGAGGTATCAGATACTTTATTTACGTGGCCTGACTTGCAAGCAAAACTAAACAGTGAGTTGCTGAACAATCTGGGCAACTATGTCAACCGAGTTTTGAGTTTTGTTGCTAAACCTCCAGGTCAAGGATATGGTTCCATTATTCCCACTATTCCTGATGATGTAAGAGCTGACTCCCACGAACCAACAAAAAAATTGGCTGATAAAGTTGCTGCATATGTGGAGCAATATATAGAAGCAATGGAGAAGGTTAAGCTAAAGCAAGGGTTGAAAATTGCAATGAGCATATCTAGTGAGGGTAACGGATATCTTCAGGAATCTCAATTCTGGCGTCTTTACAAGGAAAATCAATCTCTTTGCTCCCTAGTTATGAAGACGGCAGTTGGGGTTGTATATCTTCTTGCATGTTTGTTGGAACCTTTTATGCCATCCTTCACTCTTGAGGTATTTAAGCAGCTAGATTTGTCTCCTGAGGTGCATCTTTCACTTTGTGATGAAAAAGGAGATGTTGATAGGGTAAAAAGACCTTGGGAGATTGTAAGTGCTGGTCATAAAATTGGGACACCGCAGCCTTTGTTCAAGGAGCTGAAAGATGAAGACGTGGAGTTCTACAGGAAAAAGTTTGCAGGAAGTCAAGCAGATAGATTAGTGCGGGCAGAGGCAGAAGCAGAGGCTGGAAAGGTTGCTGAGCAACTGAAGAAAACAAAAGTTTCagATGGTAATGGAAAGAAAAAACAATCAAAATCTTCAAATGAACCCAAAAACAAGGCTGCTGCTGAACCAGAAATTTCCATAACAAGGCTTGACATTCGTGTTGGCCTTATAAAAAATGCTAAAAAGCATCCTGATGCAGATTCACTATATGTAGAAGTGATTGATGTAGGTGAAGAACAACCCAGAACTGTTGTCAGTGGGCTTGTCAAGTATATACCACTTGATGAAATGCAGAACCGAAAGGTCTGTGTCCTTTGCAACCTGAAGCCAGCAACCATGCGGGGCATTAAATCCCAAGCTATGGTTCTTGCTGCTTCCAATGATACGCAGGTTGAGCTGGTTGAGCCACCTAGTTCTGCTCAGGTTGGAGAGCGAGTTACGTTTCCGGGGTACGAAGGTGTTCCTGATGAACTCCTGAACCCAAAGAAGAAAGTATGGGAGACGTTGCAGGTTGATCTGCACACAAATGATGAACTAATTGCTTGCTATAAAGATGTTCCATTAACCACATCAGCAGGCATTTGCAAGGTTTCATCCATACGCAAAGAAACAACAGATATTACACATGATGGTGGAACATTTGTGCTAGTACCAGCACCAGATATTCCTCAAAGGATTTTGTTTACCAGAGATTAG	2496	0.4231	MGSLTEDGKSPKLPIPGKRNVLITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHAIHKQVYDWFNISFDEFGRTSSPQQTEVCQAIFKKILENNWLSENTMQQLYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELRSPRCKVCQRSPRIRDTNHLFLELPLLKDKLEKYINEMSVAGSWSQNAVQTTNSWLREGLKARCITRDLKWGVPVPHEKYRDKVFYVWFDAPIGYVSITSCYTSDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNYVNRVLSFVAKPPGQGYGSIIPTIPDDVRADSHEPTKKLADKVAAYVEQYIEAMEKVKLKQGLKIAMSISSEGNGYLQESQFWRLYKENQSLCSLVMKTAVGVVYLLACLLEPFMPSFTLEVFKQLDLSPEVHLSLCDEKGDVDRVKRPWEIVSAGHKIGTPQPLFKELKDEDVEFYRKKFAGSQADRLVRAEAEAEAGKVAEQLKKTKVSDGNGKKKQSKSSNEPKNKAAAEPEISITRLDIRVGLIKNAKKHPDADSLYVEVIDVGEEQPRTVVSGLVKYIPLDEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNDTQVELVEPPSSAQVGERVTFPGYEGVPDELLNPKKKVWETLQVDLHTNDELIACYKDVPLTTSAGICKVSSIRKETTDITHDGGTFVLVPAPDIPQRILFTRD	831

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sto4g2655	831	CDD	MetRS_core	20	390	IPR033911	GO:0004825\|GO:0006431
Sto4g2655	831	Pfam	Anticodon binding domain of methionyl tRNA ligase	443	594	IPR041872	-
Sto4g2655	831	PRINTS	Methionyl-tRNA synthetase signature	23	36	IPR033911	GO:0004825\|GO:0006431
Sto4g2655	831	PRINTS	Methionyl-tRNA synthetase signature	56	70	IPR033911	GO:0004825\|GO:0006431
Sto4g2655	831	PRINTS	Methionyl-tRNA synthetase signature	104	115	IPR033911	GO:0004825\|GO:0006431
Sto4g2655	831	PRINTS	Methionyl-tRNA synthetase signature	272	283	IPR033911	GO:0004825\|GO:0006431
Sto4g2655	831	PRINTS	Methionyl-tRNA synthetase signature	307	322	IPR033911	GO:0004825\|GO:0006431
Sto4g2655	831	PRINTS	Methionyl-tRNA synthetase signature	402	413	IPR033911	GO:0004825\|GO:0006431
Sto4g2655	831	MobiDBLite	consensus disorder prediction	612	633	-	-
Sto4g2655	831	Hamap	Methionine--tRNA ligase [metG].	19	589	IPR023458	GO:0004825
Sto4g2655	831	SUPERFAMILY	Methionyl-tRNA synthetase (MetRS), Zn-domain	156	192	IPR029038	-
Sto4g2655	831	PANTHER	METHIONINE--TRNA LIGASE CYTOPLASMIC	8	801	-	-
Sto4g2655	831	SUPERFAMILY	Nucleotidylyl transferase	18	402	-	-
Sto4g2655	831	PANTHER	METHIONINE--TRNA LIGASE	8	801	IPR023458	GO:0004825
Sto4g2655	831	Pfam	tRNA synthetases class I (M)	21	415	IPR015413	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Sto4g2655	831	MobiDBLite	consensus disorder prediction	612	642	-	-
Sto4g2655	831	Pfam	Putative tRNA binding domain	652	744	IPR002547	GO:0000049
Sto4g2655	831	Gene3D	-	156	192	IPR029038	-
Sto4g2655	831	TIGRFAM	metG: methionine--tRNA ligase	22	540	IPR014758	GO:0000166\|GO:0004825\|GO:0005524\|GO:0006431
Sto4g2655	831	ProSiteProfiles	tRNA-binding domain profile.	646	747	IPR002547	GO:0000049
Sto4g2655	831	SUPERFAMILY	Nucleic acid-binding proteins	648	790	IPR012340	-
Sto4g2655	831	CDD	Anticodon_Ia_Met	399	535	IPR041872	-
Sto4g2655	831	SUPERFAMILY	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	407	591	IPR009080	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418
Sto4g2655	831	CDD	tRNA_bind_EMAP-II_like	645	747	-	-
Sto4g2655	831	Gene3D	-	645	812	IPR012340	-
Sto4g2655	831	Gene3D	-	404	577	-	-
Sto4g2655	831	Gene3D	HUPs	20	403	IPR014729	-
Sto4g2655	831	ProSitePatterns	Aminoacyl-transfer RNA synthetases class-I signature.	28	39	IPR001412	GO:0000166\|GO:0004812\|GO:0005524\|GO:0006418

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto4g2655	Sto-Chr4	27708081	27714632	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto4g2655	K01874		-	gmx:100809861	1443.33