Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2654 ATGGCGGCCGAGAAGCTGAGGGATTTGAGCCATCCGATTGACGTGGCCCTGCTCGATGCCACTGTCGCTGCCTTCTATGGCACCGGATCTAAGGAAGAGAGAAATGCTGCTGATCAGATTTTGCGTGACTTGCAAAATAATCCAGACATGTGGCTACAAGTCATGCATATTCTACAAAACACTCAGAATCTGAATACTAAGTTCTTTGCCTTGCAGGTTCTAGAAGGTGTGATTAAATATAGATGGAATGCATTGCCTGTTGAGCAGCGAGATGGAATGAAGAATTTCATTTCTGATGTTATTGTACAGCTTTCTAGCAATGAGGCTTCATTTCGAGTGGAAAGGTTGTATGTCAACAAActcaatattattttagttcAGATATTGAAGCATGAGTGGCCTGCAAGATGGCGAAGCTTTATTCCTGACCTTGTTTCAGCGGCTAAAACTAGCGAaacaatttgtgaaaattgtaTGGCTATATTGAAACTCATCCACGAGTTATGCTTGTATGTATTATCTGCATCCCAACGGGCTGAGCTCATACGGGCAACACTGTCTACATTGCATGCTTTCCTGTCATGGATTCCTCTGGGTTATATATTTGAATCACCACTGCTTGAGACGCTTCTAAAGTTTTTTCCAATTCCGGCATATCGGAACCTGACATTGCAATGTCTGACGGAGGTCGCTGCCCTTCAATTTGGGACCTACTATGATGTGCAGTATGTTAAGATGTATAATATATTCATGGTTCAATTGCAGAGCATACTCCCTCCTACTACAAATATACCTGAGGCTTATGCGCATGGTTCCAATGAGGAACAGTCTCACATTCGAGTTCTGGAGTCCTCACAAGAGAATGTATCAGCTTTGCTATTGGGTCTTGAATATCTTATTAACATTTCATATGTGGATGATACAGAGGTTTTCAAGGTTTGCCTGGACTATTGGAACATTTTGGTATTGGAGCTGTTTGAGGCACACCGTAATTTGGAGAATCCTGCAGTAGCTGCTGCAAACTTGATGGGACTTCAGGTACCAGTCGTGCTTCCTGGCATGGTTGATGGCCATGGTGCACAGTTTCTTCAGCGTCGACAGCTTTATGCTGGTCCCATGTCAAAGTTGAGAATGCTTATGATATGTCGTATGGCTAAGCCAGAAGAGGTCCTTATAGTTGAAGATGAAAATGGGAATATTGTGCGTGAGACAATGAAGGACAATGATGTTCTTGTTCAATACAAGAGCATGAGAGAGACTCTAATCTACTTGTCTCATCTTGATCACGAGGATACTGAAAAGCAGATGCTTAAGAAATTAAGTAAACAACTGAGTGGCGAGGATTGGACATGGAACAATTTGAACACTCTCTGCTGGGCAATAGGGTCCATATCTGGTTCCATGGCGGAAGAACAGGAAAACAGATTTTTGGTTATGGTCATTCGTGATTTGTTAAATCTTTGTGAAATCACAAAGGGGAAAGATAACAAAGCCGTTATTGCAAGTAATATCATGTATGTTGTTGGGCAGTATCCACGTTTTTTAAGAGCCCACTGGAAGTTTCTAAAAACTGTTGTGAATAAGTTGTTTGAGTTTATGCATGAGACACATCCTGGAGTTCAGGATATGGCCTGTGACACTTTTCTGAAAATTGTTCAGAAGTGTAAACGTAAATTTGTAATAACCCAGGTTGGTGAAAATGAACCATTTGTATCTGAACTTCTATCAGGCCTTCCAACCACCATAGCAGATCTTGAACCCCATCAGATTCACACGTTCTATGAATCTGTTGGTCACATGATTCAGGCAGAATCTGATGCCCAGAAGAGGGATGAATTTCTCCACCGGTTGATGGAGCTTCCAAATCAGACAAATACAAGTGTTGCATCTTCTCTGGGAACATATTTCCTGCCCCAAATTTCAGTAATCTTTTTGGACATGCTGAATGTGTACAGAATGTACAGTGAGGTTATATCAAAAAGCATTTCAGAAGGAGGGCCTTTTGCATCTAAAACATCCTATGTAAAGCTTCTACGTTCTGTTAAGAGGGAAGCACTTAAGCTGATCGATACATTTTTGGATAAAGCTGAGGATCAACCACAAATTGGGAAACAGTTTGTGGCCCCTATGATGGATGCTGTTCTGGGTGATTACTCTAGGAATGTGCCTGATGCCAGGGAATCAGAGGTTTTGTCACTTTTTGCTACAATTGTAAACAAATATAAAGCTGCTATGGTTGAAGATGTACCTCGCATATTTGAAGCTATTTTTCAGTGCACACTGGAGATGATTACCaaaaattttgaagattatCCAGAGCATAGGCTCAAGTTCTTCTCTTTACTCCGTGCCATAGCAACTCATTGTTTTCCTGCATTAATCTGTTTATCAAGTCAGCTAGGACTGTCTAAAATTTGCAATATCTGTAGTCTTTGCCTGATGTTGTTTTGTGATCTCTGTCAGCAACTAAAGCTTATTATGGATTCAATCATATGGGCATTTCGGCATACTGAAAGGAATATTGCTGAAACTGGGCTTAACTTGTTGTTGGAGATGCTGAAGAAGTTTCAGcTGGAAAGTGGTGTCTTAACTGAGCCTCTTTGGGATGCTGCGACAAATCCTTATCCATACCCGAGTAATGCAGCATTTGTAAGCGAGTTTACCATAAAACTTCTGAGCACTTCATTTCCCAACATGACTGCAGCAGAGGTTGCTCAATTTGTCAAAGGACTTTTTGAGTCCACAAATGACCTATCCACGTTTAAAAATCACATACGAGATTTTCTTGTTCAATCGAAGGAGTTTTCTGCTCAGGATAACAAAGATCTCTACGCTGAAGAGGCTGCagctcagagagagagagaacgacaAAGGATGCTATCTATTCCGGGGCTTATTGCTCCAAATGAGTTGCAAGATGAAATGGTTCATGATTTCAGAGGTTTGGTTGGCCGGCGATACTGCCTTGTTTATTGGGTTGTTATGCTTGGTCTTGATGCTGCTGGTAAAACAACTATATTGTACAAGCTGCATATTGGAGAAGTTTTGTCGACAGTCCCTACTATTGGTTTTAATGTGGAGAAAGTTCAGTATAAGAATGTTATTTTCACAGTTTGGGATGTTGGAGGGCAGGAAAAATTAAGGCCACTATGGAGGCACTATTTTAATAACACAGATGGATTGATCTATGTTGTTGATAGCTTGGACCGGGAGAGAATTGGAAAAGCAAAGCAGGAATTTCAGGCTATCATAAGTGATCCATTCATGCTCAATAGTGTCATCTTGGTTTTTGCCAACAAACAGGACATGAAAGGAGCAATGACGCCAATGGAAGTATGCGAAGGACTTGGTCTCTTTGAACTCAAGAATAGAAAATGGCACATACAAGGCACTTGCGCGCTAAGGGGAGACGGCCTTTATGAGGGTTTAGACTGGTTGGCTGCAACTCTGAAGGAGAGGAAAGCTGCTGGATACTCTTCACTAGGAGCCTCATCCTTCTAA 3501 0.407 MAAEKLRDLSHPIDVALLDATVAAFYGTGSKEERNAADQILRDLQNNPDMWLQVMHILQNTQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSSNEASFRVERLYVNKLNIILVQILKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLIHELCLYVLSASQRAELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPIPAYRNLTLQCLTEVAALQFGTYYDVQYVKMYNIFMVQLQSILPPTTNIPEAYAHGSNEEQSHIRVLESSQENVSALLLGLEYLINISYVDDTEVFKVCLDYWNILVLELFEAHRNLENPAVAAANLMGLQVPVVLPGMVDGHGAQFLQRRQLYAGPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKSMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWTWNNLNTLCWAIGSISGSMAEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVITQVGENEPFVSELLSGLPTTIADLEPHQIHTFYESVGHMIQAESDAQKRDEFLHRLMELPNQTNTSVASSLGTYFLPQISVIFLDMLNVYRMYSEVISKSISEGGPFASKTSYVKLLRSVKREALKLIDTFLDKAEDQPQIGKQFVAPMMDAVLGDYSRNVPDARESEVLSLFATIVNKYKAAMVEDVPRIFEAIFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQLGLSKICNICSLCLMLFCDLCQQLKLIMDSIIWAFRHTERNIAETGLNLLLEMLKKFQLESGVLTEPLWDAATNPYPYPSNAAFVSEFTIKLLSTSFPNMTAAEVAQFVKGLFESTNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNELQDEMVHDFRGLVGRRYCLVYWVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIISDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFELKNRKWHIQGTCALRGDGLYEGLDWLAATLKERKAAGYSSLGASSF 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2654 1166 Pfam ADP-ribosylation factor family 993 1149 IPR006689 GO:0003924|GO:0005525
Sto4g2654 1166 Pfam Exportin 1-like protein 115 167 IPR013598 -
Sto4g2654 1166 ProSiteProfiles Importin-beta N-terminal domain profile. 37 103 IPR001494 GO:0006886|GO:0031267
Sto4g2654 1166 Gene3D - 635 859 IPR011989 -
Sto4g2654 1166 Gene3D - 860 973 IPR011989 -
Sto4g2654 1166 PANTHER EXPORTIN 1/5 859 977 IPR045065 GO:0005049|GO:0006611
Sto4g2654 1166 PANTHER EXPORTIN 1/5 163 277 IPR045065 GO:0005049|GO:0006611
Sto4g2654 1166 PANTHER EXPORTIN 1/5 278 623 IPR045065 GO:0005049|GO:0006611
Sto4g2654 1166 PANTHER EXPORTIN 1/5 4 165 IPR045065 GO:0005049|GO:0006611
Sto4g2654 1166 PANTHER EXPORTIN 1/5 623 857 IPR045065 GO:0005049|GO:0006611
Sto4g2654 1166 Pfam Importin-beta N-terminal domain 37 103 IPR001494 GO:0006886|GO:0031267
Sto4g2654 1166 SUPERFAMILY ARM repeat 22 927 IPR016024 -
Sto4g2654 1166 Gene3D - 1 166 IPR011989 -
Sto4g2654 1166 Gene3D - 167 633 IPR011989 -
Sto4g2654 1166 Pfam CRM1 / Exportin repeat 2 365 432 IPR041235 -
Sto4g2654 1166 SMART IBN_N_2 37 103 IPR001494 GO:0006886|GO:0031267
Sto4g2654 1166 SMART sar_sub_1 979 1150 IPR006689 GO:0003924|GO:0005525
Sto4g2654 1166 ProSiteProfiles small GTPase Arf family profile. 984 1150 - -
Sto4g2654 1166 Gene3D - 989 1159 IPR027417 -
Sto4g2654 1166 PRINTS GTP-binding SAR1 protein signature 992 1015 IPR006689 GO:0003924|GO:0005525
Sto4g2654 1166 PRINTS GTP-binding SAR1 protein signature 1020 1044 IPR006689 GO:0003924|GO:0005525
Sto4g2654 1166 PRINTS GTP-binding SAR1 protein signature 1047 1072 IPR006689 GO:0003924|GO:0005525
Sto4g2654 1166 SMART arf_sub_2 971 1154 - -
Sto4g2654 1166 Pfam CRM1 C terminal 639 858 IPR014877 GO:0005049
Sto4g2654 1166 CDD Arf1_5_like 993 1149 IPR045872 GO:0003924
Sto4g2654 1166 SMART CRM1_C_2 639 937 IPR014877 GO:0005049
Sto4g2654 1166 TIGRFAM small_GTP: small GTP-binding protein domain 993 1109 IPR005225 GO:0005525
Sto4g2654 1166 Pfam CRM1 / Exportin repeat 3 446 495 IPR040485 -
Sto4g2654 1166 PANTHER EXPORTIN 1A-RELATED 623 857 - -
Sto4g2654 1166 PANTHER EXPORTIN 1A-RELATED 4 165 - -
Sto4g2654 1166 PANTHER EXPORTIN 1A-RELATED 278 623 - -
Sto4g2654 1166 PANTHER EXPORTIN 1A-RELATED 163 277 - -
Sto4g2654 1166 PANTHER EXPORTIN 1A-RELATED 859 977 - -
Sto4g2654 1166 Pfam Chromosome region maintenance or exportin repeat 291 326 IPR041123 -
Sto4g2654 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1154 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2654 Sto-Chr4 27678242 27699095 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2654 K14290 - gmx:100813443 1684.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2654 4 27678242 27699095 Sto4g2654 4 27678242 27699095 ECH