Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2557 ATGGCCGATGAAGATTCAAATCCAACTCCACCTGTAACTGACAAGAATCACTCATCGCCGCCGCATGTCACGCCGGACTCCGATTTACCTACTCCACCAACTACCTCCACTCCCGAGTGCGACGCCGTAGCGGCGGCGGTGGTAGGTGAGAGCAGTGACTTGCCTCCGACGACGTCTGAACCGCCGGCAATGGAAGTAGCTAAGGTGGAGGAGAAAGAGGTGCCGCCGCCGCCACCGGCGACGAAGGAAGAGAGCGATGCTAAAGAGGATGTTGCTGTGGTTCAGGGTGAAAGATCGAAGAGCGTTGAAGAGCATAAGGTTCCGCAGAATCTGGTGTCGTTTAAAGAAGAGAGCAACAGAGTGGGTGATCTTTCGGAATCTCAGAGAAACGCTCTTGAGGAGTTGAAGAAGCTGGTTCAGGAGGCACTGGATACTCGCCAGTTCAGTTCTTCGCCTTCCAAGACGAAGTCGGTTGCCGCTGAAGCCTCTTCGGAAGCTGCAAAACCTGAAGGACCAACTTCGGATTCTGACGCTAGCACTGAGGTAAATCCACCTCACCAAGCCAAAATTGAAGAGAATCCAGTGAAGGAAGCGGAAGAAGTAGCGAAAGAAACATGCGAGGAACAGGTTTCGATTTGGGGTGTTCCTCTGCTCAAGGATGAGAGGAGTGATGTGATTCTGCTGAAGTTTCTTAGAGCCCGAGACTTCAAAGTGAAGGATGCATTTGTGATGATTAAGAACACAATCAGATGGAGGAAGGAGTTCAATATCGATGAGCTTGTGAATGAAGATCTTGGGGATGATTTGGAGAAAGTGGTGTTCATGCACGGATATGATAGAGAAGGGCATCCTGTTTGTTATAATGTGTATGGAGAGTTTCAGAACAAGGAGTTGTATCAGAAGGCATTCTCCACTGAGGAGAAACGAGCCAAGTTCCTCCGATGGCGGATACAGTTTCTGGAGAGGAGTATTAGGAAGCTTGACTTCAATCCTGGTGGTATCAATACCATTTTCCAAGTTAATGACCTTAAGAATTCCCCTGGGCCTGGAAAGAGGGAGCTTCGGATTGCCACCAAACAAGCTTTGCAATTGCTTCAGGACAATTATCCTGAGTTTGTTGCCAAACAGGTTTTCATCAATGTACCGTGGTGGTATCTGGCATTCTATACAATGATCAGTCCATTCTTGACACAGAGGACCAAAAGTAAATTTGTATTCGCAGGCCCATCGAAGTCGGCTGAAACACTTTTCAAGTATATTTCTCCTGAGCAAGTGCCGATTCAATATGGTGGCCTAAGTGTAGATTTCTGCGACTGCAACCCAGAATTCAGCATGTCTGATCCAGTCACGGAGGTACCCATAAAGCCAACCACAAAGCAAACTGTGGAAATCATTATTTATGAGAAATGCATCATCGTTTGGGAGCTGCGAGTGGTGGGCTGGGAGGTTAGCTGTAGTGCTGAATTCAAGCCTGATACAAAAGATGGATATTCAATTATTATACAGAAGGCCACAAAGATGTCCCCAACTGATGAACCAGTGGTTTCTAATAGCTTTAAAGTTGGCGAACTGGGCAAATTATTGCTTACCATTGACAATCCCACATTGAAAAAGAAGAGACTTCTGTACAGTATTGACAACCTGGCAAAAGGTTACTTGGTGGATGTCGGCTATACTCAGCTTTGGAAGAGGTACTGTGCATATGTTGGCATTGTAGGTCGGAAGGAATCAAAAGGGTATCCTAATGTGTTGTTTCCATTGTCGTGTGTTAGACAACTCTCAATCTTGCATGTAACAATTGAGTATGACTCCGGGGTTGTTTTGGAGCTTGTTTCAAATGCAGTTGATGATAATCATCATTGTTCGGCACTGGTGCAACGGGTTAGAAGCTTGATAGCTCGCCATTGGGATGCTGAGCTGATTCATGTCTTTCGAGAAGTTAATCAAGCTACGGACCTTATGGCAAAGCTAAGCCACTCCCTTGTGAAGGCATTCATGTCTTTGAGCCCCATGTGGGTTTTGGACCTATTCTTGCTGCTGATCTTAATGGTTCTTTGGTGCTACGTCTTTGTGTGA 2076 0.4639 MADEDSNPTPPVTDKNHSSPPHVTPDSDLPTPPTTSTPECDAVAAAVVGESSDLPPTTSEPPAMEVAKVEEKEVPPPPPATKEESDAKEDVAVVQGERSKSVEEHKVPQNLVSFKEESNRVGDLSESQRNALEELKKLVQEALDTRQFSSSPSKTKSVAAEASSEAAKPEGPTSDSDASTEVNPPHQAKIEENPVKEAEEVAKETCEEQVSIWGVPLLKDERSDVILLKFLRARDFKVKDAFVMIKNTIRWRKEFNIDELVNEDLGDDLEKVVFMHGYDREGHPVCYNVYGEFQNKELYQKAFSTEEKRAKFLRWRIQFLERSIRKLDFNPGGINTIFQVNDLKNSPGPGKRELRIATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMISPFLTQRTKSKFVFAGPSKSAETLFKYISPEQVPIQYGGLSVDFCDCNPEFSMSDPVTEVPIKPTTKQTVEIIIYEKCIIVWELRVVGWEVSCSAEFKPDTKDGYSIIIQKATKMSPTDEPVVSNSFKVGELGKLLLTIDNPTLKKKRLLYSIDNLAKGYLVDVGYTQLWKRYCAYVGIVGRKESKGYPNVLFPLSCVRQLSILHVTIEYDSGVVLELVSNAVDDNHHCSALVQRVRSLIARHWDAELIHVFREVNQATDLMAKLSHSLVKAFMSLSPMWVLDLFLLLILMVLWCYVFV 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2557 691 Gene3D - 117 464 IPR036865 -
Sto4g2557 691 MobiDBLite consensus disorder prediction 169 183 - -
Sto4g2557 691 SMART sec14_4 267 434 IPR001251 -
Sto4g2557 691 Pfam CRAL/TRIO domain 272 431 IPR001251 -
Sto4g2557 691 MobiDBLite consensus disorder prediction 65 111 - -
Sto4g2557 691 MobiDBLite consensus disorder prediction 9 24 - -
Sto4g2557 691 SUPERFAMILY CRAL/TRIO domain 272 440 IPR036865 -
Sto4g2557 691 Pfam CRAL/TRIO, N-terminal domain 206 247 IPR011074 -
Sto4g2557 691 MobiDBLite consensus disorder prediction 145 160 - -
Sto4g2557 691 PANTHER PATELLIN-3 56 545 - -
Sto4g2557 691 PANTHER PATELLIN-1 56 545 IPR044834 GO:0008289
Sto4g2557 691 MobiDBLite consensus disorder prediction 145 197 - -
Sto4g2557 691 SUPERFAMILY CRAL/TRIO N-terminal domain 116 263 IPR036273 -
Sto4g2557 691 Pfam Reverse transcriptase-like 583 656 IPR002156 GO:0003676|GO:0004523
Sto4g2557 691 MobiDBLite consensus disorder prediction 1 127 - -
Sto4g2557 691 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 262 431 IPR001251 -
Sto4g2557 691 SMART CRAL_TRIO_N_2 223 248 IPR011074 -
Sto4g2557 691 CDD SEC14 268 432 IPR001251 -
Sto4g2557 691 PRINTS Cellular retinaldehyde-binding protein signature 226 248 - -
Sto4g2557 691 PRINTS Cellular retinaldehyde-binding protein signature 389 408 - -
Sto4g2557 691 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2557 Sto-Chr4 26893910 26903462 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2557 227 426 Acyl Lipid Metabolism Gene Families AT1G55840 28.436 3.64e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2557 - - pop:7475783 712.99