Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2516 ATGGTGGATAAACCTAGTAGCATTCATCGTGCTCGATACCATTTCTCCCTCTCCAAGCTTCTATTCTGGTCCCTCGTCTTCCTCGGCTTCATTGTGTTTTTCTTCTTCAGATCTCCCCCCTCTGCTTCGCCGTCCCGCCGATCCCTCCGCGGCGGCGCCGGCTGGGAGAACTCCGTCCGTCAGTCCGCCACACCGCGTTATTCCTCTTCGTCGTCGTCAGCGAAAGCGCGTAGGGTTCTTGTCACTGGTGCTGCTGGCTTCGTCGGCGCGCACGTCTCCATTGCTCTGAAGCGACGCGGAGATGGCGTTGTCGGTTTGGATAACTACAACAAATACTACGATCCGTCTCTCAAACGCGCTCGCACCGATCTCCTCCGGCGCGAGGGGGTGTTCATTGTGGAAGGGGACATAAACGACGCCGTTCTGCTGCGGGAGCTCTTCCGATTGGTGAAATTCACCCACGTGATGCATCTCGCCGCGCAAGCTGGAGTTCGTTACGCAATGAAGAACCCCGCGTCGTATGTTCACAGCAACATCGCTGGCTTAGTCAGTCTCTTCGAGGTGTGCAAATCTGCGAATCCACAGCCTGCGATTGTGTGGGCATCCTCTAGTTCCGTTTATGGGCTCAATTCCAAGGTTCCTTTCTCGGAGAAAGATCGTACGGACCAGCCTGCGAGCTTGTACGCTGCTACGAAGAAAGCCGGTGAAGAAATTGCCCACACTTATAATCATATCTATGGCCTTTCCATTACTGGGTTGAGATTCTTCACTGTTTATGGTCCATGGGGTCGACCTGATATGGCTTATTTCTTTTTCACTAAGGATATACTGAAAGGGAAGCAGATTTCTATATTTGAAGGTCCTAATCATAGTTCTGTTGCTAGGGATTTTACCTACATTGATGATATTGTGAAGGGTTGCTTAGGGGCTTTGGATACTGCTAAGAAGAGTACTGGGAGTGGTGGGAAGAAGATGGGGCCTGCTCAATTGAGGGTTTTCAATTTGGGGAATACTTCACCTGTTCCTGTTTCTAAGCTTGTGAGCATTCTTGAGAAGTTGCTGAAAGTGAAGGCGAAGAAGAAGATTTTGCCTATGCCTAGTAATGGTGATGTGCTGTTCACTCATGCCAACATAAGCTCGGCCACAAGGGAGATTGGATACAAGCCAAGCACAGATTTACAAACAGGTGTGATATTCATGAATGTGTTTTCTACATTAACTATCATAGATGTTGTGGTCCCGCCGGTGAACATCGCGACGATGGCGTCGTCCGAGGAGGTCCCGGAGAAATTGGTGACGGAATTCTGCAGCAAAACAAAGGACCCATCTTTCTGCCACAACTTTGCAAAGGGTGACATTCAGACCTTCCTGGGGATGGAGACGGCATTGAGGACAAAAGTGTTGGACACAGCCATAGACATCACAACGGCATCAAAGAGCGCATTCTCAGGTGCCTTGGGTGACAAGCAAGTGACCGAGAAGGAAAAGGCGGCGATCCAACAGTGCATCGGCTTGTACACGAAGGTCGAACAGTCCCTTCAGAGCTCGGCTTCGCCTTCTGCAGATTTCATTGCAATTGGACAGAAGTTGCAGGTTGCTGGGGAGAGCCTATGGCAGTGTCAGATGGATTTGCATTCTCATCCAAACCACGAGGCCATTGCCTCATTGAAGATGGTTAATGGACTTGCAAATTCCTTTGTTTCCTATGTGCAATCTGAGTTCTATGCTCATTACCTGCAACTTAATCGCAAGAACTGA 1758 0.4977 MVDKPSSIHRARYHFSLSKLLFWSLVFLGFIVFFFFRSPPSASPSRRSLRGGAGWENSVRQSATPRYSSSSSSAKARRVLVTGAAGFVGAHVSIALKRRGDGVVGLDNYNKYYDPSLKRARTDLLRREGVFIVEGDINDAVLLRELFRLVKFTHVMHLAAQAGVRYAMKNPASYVHSNIAGLVSLFEVCKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASLYAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTKDILKGKQISIFEGPNHSSVARDFTYIDDIVKGCLGALDTAKKSTGSGGKKMGPAQLRVFNLGNTSPVPVSKLVSILEKLLKVKAKKKILPMPSNGDVLFTHANISSATREIGYKPSTDLQTGVIFMNVFSTLTIIDVVVPPVNIATMASSEEVPEKLVTEFCSKTKDPSFCHNFAKGDIQTFLGMETALRTKVLDTAIDITTASKSAFSGALGDKQVTEKEKAAIQQCIGLYTKVEQSLQSSASPSADFIAIGQKLQVAGESLWQCQMDLHSHPNHEAIASLKMVNGLANSFVSYVQSEFYAHYLQLNRKN 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2516 585 PRINTS Nucleotide sugar epimerase signature 105 121 - -
Sto4g2516 585 PRINTS Nucleotide sugar epimerase signature 295 310 - -
Sto4g2516 585 PRINTS Nucleotide sugar epimerase signature 330 345 - -
Sto4g2516 585 PRINTS Nucleotide sugar epimerase signature 370 387 - -
Sto4g2516 585 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 75 398 IPR036291 -
Sto4g2516 585 Gene3D Invertase/pectin methylesterase inhibitor family protein 426 570 IPR035513 -
Sto4g2516 585 PANTHER UDP-GLUCURONATE 4-EPIMERASE 2-RELATED 4 397 - -
Sto4g2516 585 Gene3D - 75 401 - -
Sto4g2516 585 TIGRFAM PME_inhib: pectinesterase inhibitor domain 417 519 IPR006501 GO:0004857
Sto4g2516 585 Pfam NAD dependent epimerase/dehydratase family 79 316 IPR001509 -
Sto4g2516 585 PANTHER EPIMERASE-RELATED 4 397 - -
Sto4g2516 585 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 429 548 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2516 Sto-Chr4 26530294 26537114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2516 8 397 Miscellaneous Gene Families AT4G00110 78.086 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2516 K08679 - jre:109011356 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g2516 4 26530294 26537114 Sto4g2516 4 26530294 26537114 ECH