Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2263 ATGGGTAAATGGAGAAATCGTAGAATCTTTCGTCAACGTAGATCTCCCACATCTGCTTCCAGATTCTACGACCTACATGCTCCTCTTCCGGAGACTTGGAAGGATGGTATACCTTTATGGGAGAAGAAATTCTGCACTTCGGTTGGATTGGTACCATGGCAGAAGATAGTTGATACAAAGAATTACATGCTCTGTCATAGTAATGTGCTTGATTGGAATGATTCTGCAGCTGAAGAAGCTTTTCAAAATGCCAAAAAACACTACTTTGCTAAGATCAACCGAATCCATTGTGACATTTCTCCGCCAGATCCAGATATTTATGTTGATCAAATAGATTGGAACCCTGATATTGATCCTGAACTGATCAAGGAATTAGATCATGCCTACTTTGCGCCCCCAGATGAAGCCGAAAGGAGTCTTGTGAAAAGCAAAAGTCGAAAAGATTTAGCAGAAAGCGGTGAAGATCCTTGGGAATGTGCTGATACAAAGCTCAACGGAGattcagaaaataaaaaacaagaatgGAGCCGTTGGGATAGTAATGTTGATGCTTCCGGAAAAGTAGGTAATTCTGACAATCCCTGGGAGTCTGGCGTTTCTCATGGAAATGGAGGATTAGCAAAGAATGCATGGAAAAGTGGTGGTCGTGGTGTTAAGTTATGGGGTTCGAACCAAGTGACTGATCATAACAATCAGTCAAGGGATCGGGCTGAAGAATCTAATCCTTGGGAGAATGGTAATCAGGGCATCCTCTGGCCGAAAGATAATGGATGGGGTGAAGTTAGAAATAGTTCTTGGAACAAGCAGCAGTTAAATAATGAGGGTCCTACAGGCAGAGGGTGGAAAAATGGTGGGGCAAATGAGTGGAAACGAAAGTGGCAAGAAGATGCTAATGCTACAAACGATTTGCAATCCGGGAAATATTATCGAGGTTGGGGTTCCCGGACAAGGGAAGATTCTCTCGGACGCACCTCAGATTCTGCAGGCTGGAAATTGATACTTCCTGTTTATTATAGAATCTCCAAGACGGTGGTATTATTTGGGTCATTTACTGAAGGTGAAACCAGATCATTGCTGTTAAAGCAGTCTTCTCAGAAAAATGAAAAGCCTGCTGAGAAGAAAAAACTGCAATTTGGTTCTCTTGATGCTGTAACTGGAGGATCTATAGGTGTTATTACTAGTGCATCGAGCAGCCGGATAAATTCACCAAAAGCACCAGCTAGCATTCCTCCCTCTGATTCTCTTAAATGCAATGGAGTGAAAATTGTCAACACAGCAAATGTTATTTCACTTAACAAATCAGAAACAATAAATAAGAATGGCAATATTGCCAATGGCTCCTTTGCTCCCTCAAATACCATTGGTATAAAAGAAGTTAAGAAAGATAAAGTGTTGTCTACTACATTATATGATGAAGATGGCTCAAATCAATTTACAAAGTTGAGCCTGAATGCTTCTGAAAATGGAAGCCTGAAGAATGCATACGAAAATGGAAGTGTCAATGGGTCTTCGTCCAAATTATCTGATCAAGACTCCAAAAAGGAACCTAATGGGCATATTGAAGACTTCAATGCTTTACTGCCTAGAGGCCTTGTCAACTCAGGAAATTTATGTTTTCTGAACGCTACAATGCAGGCCCTCTTGTCTTGTTCTCCGTTTGTTCACTTTCTGCAAGAATTAAGAACTCGTAATATTCCTAAGGTTGGCTATCCCACGTTGACTGCATTCGCTCAGTTCATAACGCAATTTGACATGCCAAGTGGCtcaaatttgaagaagaaagattTGGCTACTGTCGAGACTGGAAGTCCATTTCGTCCTATCATGTTTGAAAGTGTTCTGAAAAATTTTACCCCAGATGTGCCAAATAGCATATCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTTTGAGCTTTGTAATGGACCAAATTCATGATGAATTACTGAAGCTTGAAGGACAGTCTTTGAGTGTTAATGGGGGTAAATCTTCCCTAGTTTCTTCTGTGGAAGATGACGATTGGGAAACAGTGGGACCAAAGAATAAATCTGCTATAACAAGGACTCAAAGCTTTGTTCCTTCTGAATTAAGTGATATTTTTGGAGGACAATTGAGAAGCTTGGTGAGGGCTAAAGGAAACAGATCTGCCACCATTCAACCGTATCTCTTCCTCCAACTTGACATTTATCCTGATACTGTTCACTCGATTGAAGATGCACTCCATGTGTTTTCTGCACCAGAAACTCTTGAAGGATACAGAACTTCAATGAATGGAAAGCCTGGTGTTGTGACTGCAAGAAAATCTGTACAGATACAGACACTTCCAAAGGTAATGATATTGCATCTAATGCGGTTTGGTTATGGAAGCGAGGGAAGCACAAAGTTACACAAGCCTGTGCACTTTCCTCTTGAGCTGGTGTTGGGTCGCGATTTGCTTGTTTCACCATCTACTGAGGGTCGAAAATATGAACTTGTTGCCACAATTACTCACCATGGAAGAGAGCCTTCAAAGGGTCACTATACAGCCGATGCCCGATACGCAAACGGTCAGTGGCTACGGTTTGACGATGCTTCTGTGACTGCAATCGGAACAAGTAAGGTTTTGCATGATCAGGCTTATGTCCTTTTCTACAAGCAGATATGA 2646 0.4112 MGKWRNRRIFRQRRSPTSASRFYDLHAPLPETWKDGIPLWEKKFCTSVGLVPWQKIVDTKNYMLCHSNVLDWNDSAAEEAFQNAKKHYFAKINRIHCDISPPDPDIYVDQIDWNPDIDPELIKELDHAYFAPPDEAERSLVKSKSRKDLAESGEDPWECADTKLNGDSENKKQEWSRWDSNVDASGKVGNSDNPWESGVSHGNGGLAKNAWKSGGRGVKLWGSNQVTDHNNQSRDRAEESNPWENGNQGILWPKDNGWGEVRNSSWNKQQLNNEGPTGRGWKNGGANEWKRKWQEDANATNDLQSGKYYRGWGSRTREDSLGRTSDSAGWKLILPVYYRISKTVVLFGSFTEGETRSLLLKQSSQKNEKPAEKKKLQFGSLDAVTGGSIGVITSASSSRINSPKAPASIPPSDSLKCNGVKIVNTANVISLNKSETINKNGNIANGSFAPSNTIGIKEVKKDKVLSTTLYDEDGSNQFTKLSLNASENGSLKNAYENGSVNGSSSKLSDQDSKKEPNGHIEDFNALLPRGLVNSGNLCFLNATMQALLSCSPFVHFLQELRTRNIPKVGYPTLTAFAQFITQFDMPSGSNLKKKDLATVETGSPFRPIMFESVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQIHDELLKLEGQSLSVNGGKSSLVSSVEDDDWETVGPKNKSAITRTQSFVPSELSDIFGGQLRSLVRAKGNRSATIQPYLFLQLDIYPDTVHSIEDALHVFSAPETLEGYRTSMNGKPGVVTARKSVQIQTLPKVMILHLMRFGYGSEGSTKLHKPVHFPLELVLGRDLLVSPSTEGRKYELVATITHHGREPSKGHYTADARYANGQWLRFDDASVTAIGTSKVLHDQAYVLFYKQI 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2263 881 Pfam Ubiquitin carboxyl-terminal hydrolase 530 878 IPR001394 GO:0004843|GO:0016579
Sto4g2263 881 MobiDBLite consensus disorder prediction 136 253 - -
Sto4g2263 881 SUPERFAMILY Cysteine proteinases 527 879 IPR038765 -
Sto4g2263 881 MobiDBLite consensus disorder prediction 492 507 - -
Sto4g2263 881 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 342 881 - -
Sto4g2263 881 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 342 881 - -
Sto4g2263 881 MobiDBLite consensus disorder prediction 492 517 - -
Sto4g2263 881 MobiDBLite consensus disorder prediction 179 198 - -
Sto4g2263 881 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 530 545 IPR018200 GO:0004843|GO:0006511
Sto4g2263 881 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 529 881 IPR028889 -
Sto4g2263 881 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 823 841 IPR018200 GO:0004843|GO:0006511
Sto4g2263 881 MobiDBLite consensus disorder prediction 136 178 - -
Sto4g2263 881 Gene3D Cysteine proteinases 522 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2263 Sto-Chr4 24053821 24066313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2263 526 881 Miscellaneous Gene Families AT2G24640 29.041 4.90e-23 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2263 K11841 - gmx:100816791 760.37