LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto4g2255	ATGGATGGGTATGAAGCTACAAGGATTGTGTTCTCACGGATCCAAAACTTGGACCCTGAAAATGCTTCCAAAATCATGGGTCTGCTTCTGATTCAAGACCATGGTGAGAAAGAAATGATAAGATTAGCATTTGGTCCTGAAGCTCTGGTTCACTCTGTGATTGTCAAAGCTCGGAAAGAGCTAGGATTATCCTCGTACTCTCCGACCACACCTTCTACTCCTCCATCTCCATCCCCTTTTCTTTCTAGGCAAAATTCCACTCCTTCCAGACTCCTAAACACTAGCAGTACTGGGATtaaccttcctcctcctcctgctCTTACCATCCCAAACCCTTCTTCCACTGCTTCTTGGGCTGATGATTTGATGAGCCCAAACAACAATTTACTTGTGGGGTCTAATTCTCCCCATGTCAACAttacttcatcatcatcttcttcatccttGCCCTTTTATGGGTCGGATCCAATTGATGAGTTTCAACTTCAGGACCAGCTTTCCTTCCTCAATGATGGGTCTCCTACCCTTGCTCGCAAAAACCCAGATTTGTTCTACCCTCACTCTGACTTATCCTCTAGTCCTGGCGCTGGCGATCCCGCATACGGGTGGGGCGGGTCGGTTCACCGCCGGAGTTGCTCCGTCAACGATGTGTGTTTAGGGTCAGAGGATCCAAATTCTGGGTTGGGATGGAAGCCTTGTCTGTACTTTGCCAGAGGGTATTGCAAAAATGGTACTAGTTGTAGGTTCCTTCATGGAGGAGGAATTGGAGATTCTGATGCTGCTGCTGCAATGGTTGGGTCTCCTAGCAAAATTGAGATGATGGAGCAAAGTCACGAGCTTCTCAGATCTAAAGCTTCTCAACAGCAAAGATTGCTCATGGCTTCATCTTCTTTTCCTTACTCCCCCAAGTGCATGAATTTTCTACTACAGCAACAGAATGATACCCAAAGAGCAGCAGCTGCACTCATGATGAACGAGGATTTGCACAAGTTCGGGAGATCCAGGCTAGAAAGAAACGATTTTTCTCTCAATGGAGGTTCTGGGTTTGGAAATCCAGCTTCGAGACAGATCTACTTGACATTTCCAGCTGACAGCACTTTCAGAGAGGAAGATGTTTCAAACTACTTCAGCATTTATGGGCCTGTTCAAGATGTGAGGATTCCATACCAGCAAAAGCGTATGTTTGGGTTTGTAACCTTTGTTTATCCAGAGACTGTGAAGCTCATTCTGTCCAAAGGAAACCCTCATTTCGTTTGTGATGCTCGTGTGCTGGTCAAGCCTTACAAGGAAAAAGGCAAAGTCCCAGACAAAAAGCAGCAGCAAGTGGATAGGGGAGATTTTTCACCATGTGGTACTCCTACTGGACTTGATGCCAGAGAGCCCTTTGATCTCCAACTTGGAGGGAGAATGTACTTCAATACTCAAGACATGCTGTGGAGGAGGAAGTTGGAGGAGCAATCTGATTTGCAACAAGCCCTTGAGCTCCAAAGTAGAAGGTTAATGGGTCTGCAACTTCTTGACATCAAGAAGCAGCACCAGCGAGCATTTTCCACAGGAAGTCCAATTCCTTCACCTACACACTCTCCAAACATGTTCAATCAGAACCTGAGTGTTCTAAGCTCTGGTCCTGCTAGCACTGCACCCATCCCCATTGTTCAGAAGCAGCCATTGCAGCCGAAGTTCAATATTTCTGCTGGTGAGAATGGAGGTAGTGGCAGCAGCGACGGCAATGGCAAGCAGAGCCCGAGTCATGAAGACTGTAATTTGCAGGAATGTTTGGAGCATAATCTCCCAGATAGCCCTTTTGCTTCTCCTACAAAAGCTGCTGGAGACTACATGGCTGCCTTCTCCAATGGAGGACCAAATGAAGCCATTGATTCAGATGCCTCAGCTGCATCTGCCAACTCTGAATTTGGCAATAATAGTGCATTTCTTTCACCTCCATCTGCTCTTGACATGGGGTCATTCAAGTCCTTCAACTGTCAAATACCAAGGTACTATTATTACCTTCTATCACCACATTCAGttattcaaagttcaaaccaaGTTAGTGCTGCTGGTTCTCTTCTGGCCATGGCAGCATTGAAATGTTTGCCGGCACTGGGGGACCCATTGGCATTTAGTATCCTGAGCTTCAGGAAGAGAGAAGTTATGACCAAACAAGACCAGGAACAACAAACAAATCTGTAG	2190	0.4493	MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVIVKARKELGLSSYSPTTPSTPPSPSPFLSRQNSTPSRLLNTSSTGINLPPPPALTIPNPSSTASWADDLMSPNNNLLVGSNSPHVNITSSSSSSSLPFYGSDPIDEFQLQDQLSFLNDGSPTLARKNPDLFYPHSDLSSSPGAGDPAYGWGGSVHRRSCSVNDVCLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGGIGDSDAAAAMVGSPSKIEMMEQSHELLRSKASQQQRLLMASSSFPYSPKCMNFLLQQQNDTQRAAAALMMNEDLHKFGRSRLERNDFSLNGGSGFGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVDRGDFSPCGTPTGLDAREPFDLQLGGRMYFNTQDMLWRRKLEEQSDLQQALELQSRRLMGLQLLDIKKQHQRAFSTGSPIPSPTHSPNMFNQNLSVLSSGPASTAPIPIVQKQPLQPKFNISAGENGGSGSSDGNGKQSPSHEDCNLQECLEHNLPDSPFASPTKAAGDYMAAFSNGGPNEAIDSDASAASANSEFGNNSAFLSPPSALDMGSFKSFNCQIPRYYYYLLSPHSVIQSSNQVSAAGSLLAMAALKCLPALGDPLAFSILSFRKREVMTKQDQEQQTNL	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto4g2255	729	ProSiteProfiles	Zinc finger C3H1-type profile.	227	254	IPR000571	GO:0046872
	Sto4g2255	729	SMART	c3hfinal6	229	253	IPR000571	GO:0046872
	Sto4g2255	729	MobiDBLite	consensus disorder prediction	79	102	-	-
	Sto4g2255	729	MobiDBLite	consensus disorder prediction	514	535	-	-
	Sto4g2255	729	MobiDBLite	consensus disorder prediction	432	459	-	-
	Sto4g2255	729	MobiDBLite	consensus disorder prediction	64	120	-	-
	Sto4g2255	729	SMART	rrm1_1	356	426	IPR000504	GO:0003723
	Sto4g2255	729	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED	1	671	-	-
	Sto4g2255	729	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	355	431	IPR000504	GO:0003723
	Sto4g2255	729	Gene3D	-	222	317	-	-
	Sto4g2255	729	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS)	1	671	-	-
	Sto4g2255	729	SUPERFAMILY	CCCH zinc finger	230	252	IPR036855	GO:0046872
	Sto4g2255	729	CDD	RRM_AtC3H46_like	357	426	IPR034365	-
	Sto4g2255	729	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	367	412	IPR000504	GO:0003723
	Sto4g2255	729	Gene3D	-	354	449	IPR012677	-
	Sto4g2255	729	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	232	252	IPR000571	GO:0046872
	Sto4g2255	729	SUPERFAMILY	RNA-binding domain, RBD	367	441	IPR035979	GO:0003676
	Sto4g2255	729	Coils	Coil	720	729	-	-
	Sto4g2255	729	MobiDBLite	consensus disorder prediction	561	586	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto4g2255	Sto-Chr4	23985200	23988409	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto4g2255	-		-	gmx:100801807	976.852

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto4g2255	4	23985200	23988409	Sto4g2255	4	23985200	23988409	ECH