Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2249 ATGGCGTGCGTAAAAGGGGTGAATCGATCGGCGTCCGTGGCCTTGGCACCGGACGCACCGTACATGGCGGCCGGAACCATGGCGGGGGCGGTTGATCTGTCCTTCAGCTCCTCGGCTAATCTCGAAATATTCAAGCTCGATTTTCAGTCCGATGATCAGGAACTGCCTTTGGTTGGGGAGTGCCCGAGCTCCGAGCGGTTCAATCGTCTGTCGTGGGGGAAGTGTAATTCTGCCTCTGAAGGTTTCGCCCTCGGGCTCGTTGCTGGTGGGCTGGTCGATGGGAACATTGATCTCTGGAATCCACTCACTTTGATCAGTTCGGAGGCAAAAGAAAGTTCTCTTGTTGGACATCTTGTAAGGCATAAAGGGCCTGTTCGTGGTCTCGAGTTTAATACCATTTCACCAAATCTTCTTGCATCTGGGGCTGAGGATGGTGAAATCTGCATATGGGATTTGGCCAATCCTTCAGAGCCTTCACATTTTCCACCTCTCAGGGGTAGTGGCTCTGCTTCCCAGGGTGAAATTTCATTCTTATCTTGGAATAGCAAAGTCCAACACATATTAGCATCAACTTCATATAATGGGACCACTGTGGTCTGGGACCTAAGGAAGCAAAAGCCAGTGATAAGCTTTACAGACTCAGCTAGAAGGCGGTGTTCAGTTTTGCAGTGGAATCCTGATTTTGCCACTGAGCTAGTTGTTGCATCAGATGAAGATGGTTCTCCTTCTTTGAGGCTTTGGGATATGAGGAATATAATGACACCAGTTAAAGAGTTTGTGGGACACAGTAGAGGTGTAATTGCAATGTCATGGTGTCCCATTGATAGCTGTTATTTGCTTAGCTGTGCCAAAGATAGTAGAACAATTTGCTGGAACACGAGTTCTGGAGAGATTGTATGTGAATTGCCTGCTGGGACCAACTGGAACTTTGATGTGCACTGGTATCCTAAAATACCTGGAGTAATTTCAGCATCTTCCTTTGATGGAAAAATCGGCTTCTACAATGTTGAGGGTTGCAGTCGTTATGGTGTTCAGGAAAATGACTTTGGTGCAGTTTCACTAAGAGCTCCTAAATGGTATAAACGTCCTGTTGGGGTGTCTTTTGGTTTTGGTGGCAAGCTTGTATCATTTAACGCCAAGTCATCTACCACAGGTGCTAGAGCTGGGGCTTCAGAGGTTTATGTTCATAATATGGTAACTGAACATAGTCTAGTGAGTCGTTCCTCGGAATTTGAAGCTGCAATACAAAATGGGGAAAGGTCTTCACTGAGAGTTTTGTGCGATAAAAAATCTCAGGAATCAGGGTCTGAGGAGGAAAGGGAAACGTGGGGCTTCTTGAAGGTTATGTTTGATGATGATGGTGCAGCACGGACAAAACTACTCACACACCTTGGTTTTAGTGTACCTCTCGAAGAAAAAGAAACAGCTTTAGATGATCTCACCCAAGAAGTCAATGGACTTGAGGAGACAGCTGTTGATGAAGTAGGACCTGGGGCTACTAATGAATCAACTGTTTTGCCCCCTGATAATGGGGAGGATTTCTTTAACAATCTTCCTAGTCCCAGAGCTGATTCACCTTTATCTACTCCTGGCGGTAATACTGTTCCGGAGGATAGTGCCAATGGTTTGGAGAAAATCCAAGAAGAGTTGGAAGTGGAGGAAAGCAGTGATCCTACATTTGATGACAATGTTCAACGTGCTTTAGTTGTGGGGGATTACAAAGGAGCAGTTGCACTATGCATATTTGCAAATAAGTGGGCTGATGCTCTAGTTATTGCTCATGTAGGTAGTGCTTCATTGTGGGAAAGTACACGGGACCAATACCTTAAGAGAATCAGATCACCATACCTAAAGATTGTCTCAGCAATGGTCAGCAATGATCTATTAAGCCTTGTGAACACTAGGCCTCTAAAATTTTGgaaagagactcttgctctgcTTTGTAGTTTTGCACAGAGAGACGAATGGACAATGCTTTGTGACACACTTGCTTCAAAACTCATGGCAGCTGGAAATACGTTAGCTGCAACTCTCTGTTATATCTGTGCTGGAAATATTGATAAAACAGTGGAAATTTGGTCAAAGAATCTGCAGACTGAGCATGAAGGAAAATTGTATGTTGACATTCTTCAGGATTTGATGGAAAAGACTATTGTTCTTGCCTTAGCAACTGGACAGAAGCGATTTAGTGCATCTCTTTGCAAGCTGGTTGAGAAATATGCTGAGATTTTAGCAAGTCAAGGGCTGTTAAGTACAGCAATGGAGTATTTAAAACTTTTGGGTTCTGATGAACTGTCACCTGAACTTGTAATCTTAAAAGATCGGATTGCAGTTTCCACAGAACCTGAGAAAGATGTCAAGACTACTGCTTTTGAAAATTCTCCATCACAGAGTGGATCATATTACGGTGCAGATAATTCCAATTATAATAGAAATTATTATCAGGAGTCAGTATCCACACATCTGCAGCGGGGTGGTTCTGGAAATCTGTATGATGAAAGCTATCAACAGCCTTTTGATCCTTCATATCGTAGAGGATATGCTGCTCCTGCTTCTGTTCCTGCGCCTGCTCCATATCAGCAATCACAACCACCTAATTTGTTTGTCCCATCACAGGCACCCCAGGTTCCCCAAGTACCTCAGCAAAACTTCTCTACTGCTCCTGTTACACAACCTCCTTTGAGACCTTTTGTTCCTCACACTCCTCCTGTGCTAAGAAATGTTGAGCAATATCAGCAGCCAACATTGGGTTCTCAGTTGTATCCtaCAACTGGTAATCCACCGTACCAACCTACACCCCCTCCTACATCTCAAATGGGTTTGGTTCATGGCCAGAAGTTGACACAAGATACAGCCCCAACCCCAAATCCAAGGGGATTCTCACCGGTCTCCAGTACCGGTGCTGTCCAAAGACCCGGGATGGGATCGATGCAACCTCCCAGTCCCCCTCAGGCAGCACCTGTACAACCAGCTCCAGCACCAGCTGCTCCAGCACCTACTGTGCAGACAGCCGATACTTCAAATGTGCCTGTGCACCAAAAGCCCATTATTGCAACATTGACAAGGCTTTTCAACGAGACATCGGAAGCACTAGGAGGTTTACGTGCAAATCCAGCTAAAAAGCGGGAAATAGATGACAACTCAAAGAAACTCGGAGGATTGTTTGCAAAATTGAACAGTGGAGACATCTCTAAAAATGCTGCTGATAAGCTCCTTCAGCTCTGTCAAGCATTAGGCAAAGGCGATTTCGGCACTGCCCTACAAATCCAGGTACTCCTCACTACAACAGAATGGGATGAATGCCAGTCCTGGTTAGGTTCCCTGAAGCGAATGATCAAAACAAGGCAGAGTgtgagaataaattaa 3366 0.4465 MACVKGVNRSASVALAPDAPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSDDQELPLVGECPSSERFNRLSWGKCNSASEGFALGLVAGGLVDGNIDLWNPLTLISSEAKESSLVGHLVRHKGPVRGLEFNTISPNLLASGAEDGEICIWDLANPSEPSHFPPLRGSGSASQGEISFLSWNSKVQHILASTSYNGTTVVWDLRKQKPVISFTDSARRRCSVLQWNPDFATELVVASDEDGSPSLRLWDMRNIMTPVKEFVGHSRGVIAMSWCPIDSCYLLSCAKDSRTICWNTSSGEIVCELPAGTNWNFDVHWYPKIPGVISASSFDGKIGFYNVEGCSRYGVQENDFGAVSLRAPKWYKRPVGVSFGFGGKLVSFNAKSSTTGARAGASEVYVHNMVTEHSLVSRSSEFEAAIQNGERSSLRVLCDKKSQESGSEEERETWGFLKVMFDDDGAARTKLLTHLGFSVPLEEKETALDDLTQEVNGLEETAVDEVGPGATNESTVLPPDNGEDFFNNLPSPRADSPLSTPGGNTVPEDSANGLEKIQEELEVEESSDPTFDDNVQRALVVGDYKGAVALCIFANKWADALVIAHVGSASLWESTRDQYLKRIRSPYLKIVSAMVSNDLLSLVNTRPLKFWKETLALLCSFAQRDEWTMLCDTLASKLMAAGNTLAATLCYICAGNIDKTVEIWSKNLQTEHEGKLYVDILQDLMEKTIVLALATGQKRFSASLCKLVEKYAEILASQGLLSTAMEYLKLLGSDELSPELVILKDRIAVSTEPEKDVKTTAFENSPSQSGSYYGADNSNYNRNYYQESVSTHLQRGGSGNLYDESYQQPFDPSYRRGYAAPASVPAPAPYQQSQPPNLFVPSQAPQVPQVPQQNFSTAPVTQPPLRPFVPHTPPVLRNVEQYQQPTLGSQLYPTTGNPPYQPTPPPTSQMGLVHGQKLTQDTAPTPNPRGFSPVSSTGAVQRPGMGSMQPPSPPQAAPVQPAPAPAAPAPTVQTADTSNVPVHQKPIIATLTRLFNETSEALGGLRANPAKKREIDDNSKKLGGLFAKLNSGDISKNAADKLLQLCQALGKGDFGTALQIQVLLTTTEWDECQSWLGSLKRMIKTRQSVRIN 1121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2249 1121 SUPERFAMILY WD40 repeat-like 12 337 IPR036322 GO:0005515
Sto4g2249 1121 MobiDBLite consensus disorder prediction 864 890 - -
Sto4g2249 1121 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 118 152 - -
Sto4g2249 1121 ProSiteProfiles Trp-Asp (WD) repeats profile. 118 160 IPR001680 GO:0005515
Sto4g2249 1121 MobiDBLite consensus disorder prediction 818 836 - -
Sto4g2249 1121 MobiDBLite consensus disorder prediction 818 902 - -
Sto4g2249 1121 MobiDBLite consensus disorder prediction 516 539 - -
Sto4g2249 1121 Gene3D - 1 337 IPR015943 GO:0005515
Sto4g2249 1121 Gene3D - 352 780 - -
Sto4g2249 1121 Gene3D Functional domain of the splicing factor Prp18 1006 1120 - -
Sto4g2249 1121 PANTHER SEC31-RELATED PROTEIN 2 1119 IPR040251 GO:0006888
Sto4g2249 1121 Pfam Sec23-binding domain of Sec16 564 759 IPR024298 -
Sto4g2249 1121 Coils Coil 470 490 - -
Sto4g2249 1121 MobiDBLite consensus disorder prediction 936 972 - -
Sto4g2249 1121 ProSitePatterns Trp-Asp (WD) repeats signature. 138 152 IPR019775 -
Sto4g2249 1121 MobiDBLite consensus disorder prediction 976 997 - -
Sto4g2249 1121 MobiDBLite consensus disorder prediction 789 805 - -
Sto4g2249 1121 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN, ANCESTRAL COATOMER ELEMENT 1, SEC16/SEC31-RELATED 2 1119 - -
Sto4g2249 1121 MobiDBLite consensus disorder prediction 917 1010 - -
Sto4g2249 1121 MobiDBLite consensus disorder prediction 521 536 - -
Sto4g2249 1121 SMART WD40_4 252 292 IPR001680 GO:0005515
Sto4g2249 1121 SMART WD40_4 111 151 IPR001680 GO:0005515
Sto4g2249 1121 SMART WD40_4 161 201 IPR001680 GO:0005515
Sto4g2249 1121 SMART WD40_4 204 248 IPR001680 GO:0005515
Sto4g2249 1121 SMART WD40_4 295 335 IPR001680 GO:0005515
Sto4g2249 1121 MobiDBLite consensus disorder prediction 783 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2249 Sto-Chr4 23909484 23927448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g2249 118 337 Miscellaneous Gene Families AT5G08390 23.874 1.31e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2249 K14005 - gmx:100788642 1763.43