Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g2197 ATGAATGCCCCCGATCGTTACGAGCGTTTCGTCGTTCCAGAAGGCACCAAAAAgGTCTCTTATGAGAGGGACACAAAGATTATGAATGCCGCGGCCTTCACTGTTGAGAGAGAGGACCACACAATAGGAAACATTCTTCGCATGCAGCTGCACAGGGACCCTAATGTGTTGTTTGCTGGATACAAGCTTCCCCATCCTCTTCAGTACAAAATTCTTGTCAGGATCCACACCACTAGTCAGTCTTCACCAATGCAGGCATATAATCAGGCTATTAATGATCTTGACAGGGAACTTGATCATATGAAGAATGCCTTTGAGGTGTGA 324 0.4568 MNAPDRYERFVVPEGTKKVSYERDTKIMNAAAFTVEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRIHTTSQSSPMQAYNQAINDLDRELDHMKNAFEV 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g2197 107 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 31 103 IPR009025 GO:0006351|GO:0046983
Sto4g2197 107 CDD RNAP_II_RPB11 13 105 IPR037685 GO:0001055|GO:0005665|GO:0006366
Sto4g2197 107 PANTHER DNA-DIRECTED RNA POLYMERASES II IV AND V SUBUNIT 11 1 105 - -
Sto4g2197 107 Coils Coil 84 104 - -
Sto4g2197 107 Gene3D - 1 107 IPR036603 GO:0006351|GO:0046983
Sto4g2197 107 PANTHER DNA-DIRECTED RNA POLYMERASE I,II,III 1 105 - -
Sto4g2197 107 SUPERFAMILY RBP11-like subunits of RNA polymerase 1 106 IPR036603 GO:0006351|GO:0046983
Sto4g2197 107 ProSitePatterns RNA polymerases L / 13 to 16 Kd subunits signature. 35 66 IPR008193 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g2197 Sto-Chr4 23417936 23418645 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g2197 K03008 - jre:108983948 212.231