Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0300 ATGTCTCAGAAGGCAACTTCCTACCTCTCTTCCCTGCTTCGAAGTTGCTTACCTCATTCTGCGATCTCGCAAGCCCAGCAATGCCATGCCCAGATTCTTCTTCATGCCTTGCTCCCCAACGTCACTCTTCAAACCGATCTCTTATTGGTGTACTCCAGATGCGGCTTTCTCCATCATGCACGCCAAGTGTTCGACAAAATGCTCCAAAGAAACATGCATTCATGGAACATCATGATTGCCTCATTCGTCGAAAATTCTCTCTATTCTGATGCTATAACACTATTCCGTGAATTTCAGATGATGGGTCTTCGTCCTGATCACTATACTTTGCCTCCTCTGTTCAAGGCTTCCACTGGAGTAGCAGATACTTCTCTTGGTAAGACTTGTCATGGTCTGGTGATCAAGCTTGGGTACGAGGGGTATGTCGTTTTGGGAAGTTGTGTGCTGGAACATTATGTGAAATGTGGGGCTATGAATGAGGCAAAACGGGTGTTTTCTAACATGTCGTTTAGGGACTCTGTAGTGTGGAATTTGATGATTTCTGGGTTTGCAAGGGGTGGATTTTATTCTGATGCTTTGAATTGTTTCAAGAGAATGCTTTTGAATGGATTTAAGATGGATTCCATGACTGTTCCTAGTGTTTTGAATGCTTGTGGAAGGGAAGGAGACTtgaggaaaggaaaagaagtcCATGGACATGTAGTTAAACTTAAAGGCTTCATGTTTGATGTAGATACTGCCATTGGGAATGCATTAATTGACATGTATGGGAAATGTGGATTCCTGAATTATTCAGAGAAGGTCTTCAGAACCATGTCTGATACAAATTTGGTCACATGGACCTCCATGATATCTTGTTATGGGATACATGGGAAGGGAGAGGAATCTCTATCTCTCTATAAGAAAATGATAGATTTTGGGTTCATACCAAACTCTGTCACACTCACAGCAATCTTAGCTAGTTGTAGTCATTCAGGTCTAGTTCATCAAGGCTTGcaaattttcaactcaattcgtTCAGAATATAGACTTGAGCCCAGTGTCGAACACTATGCTTGTATGGTGGATCTTCTGGGTCGTTGTGGGTATCTTGTGGAAGCACTTCAGTTATTGAAAAGTATGAAATCATCAGCCACAGCAAGCATTTGGGGTGCCTTGCTTGGTGGTTGTATGATGCATAAGAATGttgaaattggagaaattgCAGCTCAGAATCTTTTTCTCTTAGAACCAAATAATGCTAGCAATTACATTACTCTGTGTAGTTTATATGAATCTCACAGTATGCTTGAACGTGTTTCAAGTGTTAGAGCGAAATTGAGGGTATTGGATTTGGTAAAAGCTCCTGGTTGTAGCTGGATAAATATTGCAGGGAGAGTTCGTAAGTTCTATCAAGGGGATCTTTCTCATCAATTAGCTGAGATGATTCAcgaaatatcatatcaaattagtAACACTGAAATGACTGAAGAACGTACTCCAGGTAGACACCAGTGGCTACAATCAGGGAACAATGGTTTGTCACTCCAGTTACCAACATGTGCATCACTCCGGAAAGCCGACATAGAAGTAACATGGAGAACATTTATGGGAAATGTGACATTCTTTACCACTTCCAAAATTGTCTCTACAAACAAGCTTTTATCCCTTCCTTCAGTTTGTAAAGTAGGGAACTGGGTCACATTGCAAGTCCTATGGATTTCATCACTGATTCAGACAAGAAAACTAGATCAGTGGTGTTGA 1743 0.397 MSQKATSYLSSLLRSCLPHSAISQAQQCHAQILLHALLPNVTLQTDLLLVYSRCGFLHHARQVFDKMLQRNMHSWNIMIASFVENSLYSDAITLFREFQMMGLRPDHYTLPPLFKASTGVADTSLGKTCHGLVIKLGYEGYVVLGSCVLEHYVKCGAMNEAKRVFSNMSFRDSVVWNLMISGFARGGFYSDALNCFKRMLLNGFKMDSMTVPSVLNACGREGDLRKGKEVHGHVVKLKGFMFDVDTAIGNALIDMYGKCGFLNYSEKVFRTMSDTNLVTWTSMISCYGIHGKGEESLSLYKKMIDFGFIPNSVTLTAILASCSHSGLVHQGLQIFNSIRSEYRLEPSVEHYACMVDLLGRCGYLVEALQLLKSMKSSATASIWGALLGGCMMHKNVEIGEIAAQNLFLLEPNNASNYITLCSLYESHSMLERVSSVRAKLRVLDLVKAPGCSWINIAGRVRKFYQGDLSHQLAEMIHEISYQISNTEMTEERTPGRHQWLQSGNNGLSLQLPTCASLRKADIEVTWRTFMGNVTFFTTSKIVSTNKLLSLPSVCKVGNWVTLQVLWISSLIQTRKLDQWC 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0300 580 Gene3D Tetratricopeptide repeat domain 250 457 IPR011990 GO:0005515
Sto4g0300 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Sto4g0300 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Sto4g0300 580 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Sto4g0300 580 TIGRFAM PPR: pentatricopeptide repeat domain 73 106 IPR002885 -
Sto4g0300 580 TIGRFAM PPR: pentatricopeptide repeat domain 278 311 IPR002885 -
Sto4g0300 580 Pfam PPR repeat 250 273 IPR002885 -
Sto4g0300 580 Pfam PPR repeat 74 102 IPR002885 -
Sto4g0300 580 Pfam PPR repeat 48 71 IPR002885 -
Sto4g0300 580 Pfam PPR repeat 278 308 IPR002885 -
Sto4g0300 580 Pfam PPR repeat 351 376 IPR002885 -
Sto4g0300 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Sto4g0300 580 PANTHER OS11G0213500 PROTEIN 3 490 - -
Sto4g0300 580 Pfam PPR repeat family 172 218 IPR002885 -
Sto4g0300 580 Gene3D Tetratricopeptide repeat domain 130 231 IPR011990 GO:0005515
Sto4g0300 580 Gene3D Tetratricopeptide repeat domain 1 123 IPR011990 GO:0005515
Sto4g0300 580 PANTHER OS07G0578800 PROTEIN-RELATED 3 490 IPR045215 GO:0003723|GO:0009451
Sto4g0300 580 Pfam E motif 393 455 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0300 Sto-Chr4 2320911 2325053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0300 9 478 Glycoside Hydrolase AT3G49170 33.684 5.80e-95 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0300 - - qsu:111997314 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0300 4 2320911 2325053 Sto4g0300 4 2320911 2325053 ECH