Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0282 ATGGAATCGGAGAAGGGAGGGTTTGGTGCTGCCGTAGTGGCTAATTTTATGAGACCTTCTTGGGCGGTGCTGTTTCTTATGTTCGCTCTGATAACCTTCGTCTCGCTTCAGCTTCCGGCGATGACGGTTTTTCCGTTATCGGTGCTCTCGAGCTCGACAAATCCCGGCGTGTCGGAGAATCATCGGAGCTGCTCCGATTATTTTCGCGGCGTTCACGGAAGGAAGTTCGTTATGTCGATCAAGGATTTCGGAGGGATCGGTGACGGGAAGACTTCGAATACCGAAGCGTTTCGGAGTGCCGTACGGTACATGCAGCGTTTCGGGGATAAAGGTGGTTCACAGCTGAATATTCCCCAGGGGAAGTGGCTTACTGGAAGTTTTAATCTCACCAGTAATTTCACGCTTTTTCTTGAAGAAGGTGCTGTTATTTTGGGTTCTCAGGATCCAAAAGAGTGGCCTATAATTGAGCCACTGCCATCTTACGGAAGAGGACGAGAGAGGTTAGGAGGAAGACATATCAGCCTTATACATGGACATGGCCTTCACAATGTTGTCATCACAGGACAAAATGGGATAGTTGATGGTCAGGGAAAGATGTGGTGGGATCTTTGGTGGAACAGAACATTGGAGCACACAAGAGGCCACCTCCTTGAACTAATCAACTCAGATAATGTTCTCGTATCGAACCTCACATTTCAAAATTCTCCATTTTGGACCATCCATCCTGTTTACTGCAGTAATGTTGTTATCAAAGGAATGACTATATTGGCTCCTCTTAACGCTCCAAATACTGATGGAATAGACCCAGATTCAAGTTCTAATGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTAGCCATCAAGAGCGGTTGGGATCAATACGGGATCACCATGGCCCGTCCTAGCACGAATATAATAGTGAGAAGAGTTTCGGGAACCACACCAACTTGTTCTGGTGTAGGAATAGGCAGTGAGATGTCTGGTGGAATTTCAAATATAACCATTGAGGATTTGCATGTTTGGAATTCTGCAGCCGGTGTGCGAATCAAATCGGATAACGGTAGAGGCGGGTATGTAGCAAATGTGACCATAAGTGGCTTAAGAATGGAGAGAGTCAAGATCCCCATCAAGTTTAGCAGAGGCTCAAATGACCATCCTGATGATGGATGGGATCCAAAAGCTGTTCCTAAGTTTAAGGGCATCTTAATCAGCAACGTTATCAGTGTAAATTCGACAAAAGCCCCAGTTTTGGAAGGTATAAAGGATGCTTCATATGAAGGCTTGTGCTTCAGAAACATCACCTTGCTTGGTATTGCCACATCTGGAACATGGCATTGTGAGTACGTTTCAGGCTTTGCCTCTGAGGTGTTTCCTGTGCCATGTCCTGAGTTGAGTAGCAATGGCACTTCATCCTGGTGCTCACCTTCCTGA 1443 0.4581 MESEKGGFGAAVVANFMRPSWAVLFLMFALITFVSLQLPAMTVFPLSVLSSSTNPGVSENHRSCSDYFRGVHGRKFVMSIKDFGGIGDGKTSNTEAFRSAVRYMQRFGDKGGSQLNIPQGKWLTGSFNLTSNFTLFLEEGAVILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGHGLHNVVITGQNGIVDGQGKMWWDLWWNRTLEHTRGHLLELINSDNVLVSNLTFQNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGITMARPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNITIEDLHVWNSAAGVRIKSDNGRGGYVANVTISGLRMERVKIPIKFSRGSNDHPDDGWDPKAVPKFKGILISNVISVNSTKAPVLEGIKDASYEGLCFRNITLLGIATSGTWHCEYVSGFASEVFPVPCPELSSNGTSSWCSPS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0282 480 Pfam Glycosyl hydrolases family 28 174 454 IPR000743 GO:0004650|GO:0005975
Sto4g0282 480 PANTHER PECTIN LYASE-RELATED 14 478 - -
Sto4g0282 480 SUPERFAMILY Pectin lyase-like 74 468 IPR011050 -
Sto4g0282 480 Gene3D - 63 455 IPR012334 -
Sto4g0282 480 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 14 478 - -
Sto4g0282 480 SMART pbh1 363 409 IPR006626 -
Sto4g0282 480 SMART pbh1 306 328 IPR006626 -
Sto4g0282 480 SMART pbh1 334 355 IPR006626 -
Sto4g0282 480 SMART pbh1 245 271 IPR006626 -
Sto4g0282 480 SMART pbh1 272 304 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0282 Sto-Chr4 2175618 2178697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0282 1 478 Glycoside Hydrolase AT4G33440 65.000 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0282 - - gmx:100814190 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0282 4 2175618 2178697 Sto4g0282 4 2175618 2178697 ECH