Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0267 ATGGGTGGGCGCTCCATCAACGTTCTGAATGTGGCGGAGAAGCCGTCGGTGGCCAAGTCCGTCGCCGCCATACTGTCGAGGAACCAGGGTTTGCGAGTAAGGGAGGGTCGTTCCCGCTACAACAAAATCTTCGAGTTCAATTACACGATTCGTGGTCAGCCCTGCCACATGCTCTTTACATCCGTCACTGGCCACCTCATGGAGCTCGAGTTCGAAGATCGTTATCGCAAGTGGCACTCATGCGACCCCGCCGATCTCTACCATGCTTCTGTACAAAAATTTGTCCCCGAGGACAAAAAGGATATCAAGAGAACACTTGAGGAGGAAGCAAGGAGGTGCCAATGGTTGGTTTTGTGGCTTGATTGTGATAGAGAGGGTGAAAACATTGCATTTGAAGTAATAGAAGTCTGCATGGCAGCAAATCGCCATCTTACTTTAAAGAGGGCCCGTTTTTCTGCCTTGATTGACAGGGAAATACATCAATCAGTACAGAATCTTGTTGAACCTAATAAGTGGTTTGCTGATGCTGTGGACGCTAGGCAAGAAATAGATCTTCGAATTGGTGCTTCTTTTACCAGATTCCAGACCATGTTAATGAGAGATGCTTTTATCATTGATTCTGCTTCAGATGATAGAAATCTTGTCTTGAGTTATGGCCCTTGTCAGTTCCCTACACTTGGATTTATTGTGGAGAGGTACTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGTCAATTAATTGTTCTCATAAATCAGATGAAGGCACAGCTAATTTCAGTTGGATGCGGGGCCATCTGTTTGATTATACTTGTGCAGTTATAATATACGAGATGTGTGTTCAGGAACCAACTGCAACTGTCACAAATGTTAGACAACAGGAGAAGCTGAAGTATCCTCCACATCCTCTGAATACCATTGAGCTTGAGAAACGTGCTTCGCGATACTTCCGGATGAGTTCTGAACACACAATGAAGGTTGCAGAGGAGCTATATCAAGCTGGTTTTATCAGTTATCCTCGTACAGAAACTGATAGCTTTTCTTCAAGGACTGATTTGCATACAATTGTACAAGAACAGCAAGGGCATCCAGAGTGGGGACCATATGCACAGCGGTTATTGGATCCTGGAGCAGGACTTTGGAGAAACCCTAGTAATGGTGGACACGATGACAAGGCCCATCCACCCATTCACCCCACAAAATTTTCTATTGGAGAATCTGGTTGGAGCCCGGATCACCGTAAATTGTACGAGTTAGTTGTTCGTCATTTTTTAGCATGCGTCTCGCAGCCTGCGGTAGGAGCTGAAACCATTGTTGAAATTGATATAGCTGGTGAATTGTTTTCTTCATCTGGGAGGGTGATACTGGCGAAGAACTACCTGGATGTTTATCGCTATGAATCTTGGGGTGGATCAATGATTCCAACATATACAGTTGGTCAACAGTTTATTCCAACGACATTGACCCTTGATTCAGGAGTGACCAGGCCCCCACCACTTCTTAGTGAAGCTGATCTACTGAGTTGTATGGACAAGgaggGTATTGGTACTGATGCTACAATGCATGATCATATCAAGAAGCTGCTTGATCGGTTTTATGCAACAAAGGATGCAAATACTCGTTTCACGCCAACTAATCTTGGAGAGGCACTTGTTATGGGATATGATGACATGGGTTATAAGCTCTGGAAACCATATCTCAGAGCAGTTATGGAACGTGACATGAAAGCAGTCAGCGAAGGTAATAAAAGCAAAGCTGAAGTCTTGGCAAGTAGCCTGCAGCAGATGAAAGATTGCTTCCTAGATGCAAGGTTAAATAAAGTGAAACTTCTGGAAGCCATGGCAATATTTTTCGAGAGGTCTAATAGAACTGGAAGCAATGAGATGCATGCAGCTGGAGAAGTTGTTAGGCGATGTGGGCATTGCCAAGAATCAGACATGGTGCTAAGGCAAAGTCGAGATGGCAATTTTATGGTTGGATGTTTGGGTTACCCACAGTGTAGGAATGCTGTCTGGCTCCCTGGATCAGTATCAGAAGCAGCTGTGACCACTAATATTTGCAACTCTTGCACCCCTGGCCCTGTTTACCTAATTCAATTCAAGTTTCGCCAATTGGAAATACCACCAAACTACAATGTCAACCATTTGGGTTGCATAGGTGGCTGTGATGATATTCTTAAACAGCTGATAGAAATCTGTGGCACTGGTCCTCGCATGCCAGCAAGAGCGAGAGGACCAACTGCAGCACCCAGCAATGCCCACCAAACTAACACAAGGCAAGTAGTTTGTATGTACTGTCAAGAAACAGGGCATTCTTCCAATAATTGTCCTTCGCAGACTTCAGGCTCCAGGAATGCTCGACGTCGTGGAATGAACCAACATAGTGGGGAAGCTTCCATTTCATGCAGTACATGTGGAATGCCTTGTGTTTTGCGAACTGCAAATACAGCAAATAACAGGGGAAGGAAGTTCTACTCTTGTCCATCTCAGGAATGCAACTTttttgtATGGGAGGATAGCCTCAACAATAGCACTGGAGGTAGAAGTGTCTCTCGTACGAATAGTTTTCCAACATCTAATCCTAGCAGAAATGGTGGCCGTGGTAGGGGTAGCCGGAATGGAACTCATGCTGCTACTGCAACTTTTGTGTCAGCAACTGGTGATCCTATATCTGGTCGAAGGTGCTTTGTGTGTGGTGATCCGTCTCACTTTGCTAATGTCTGCCCCAACCGTGGAGCATGA 2742 0.4508 MGGRSINVLNVAEKPSVAKSVAAILSRNQGLRVREGRSRYNKIFEFNYTIRGQPCHMLFTSVTGHLMELEFEDRYRKWHSCDPADLYHASVQKFVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVIEVCMAANRHLTLKRARFSALIDREIHQSVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMRDAFIIDSASDDRNLVLSYGPCQFPTLGFIVERYWEIQAHEPEEFWSINCSHKSDEGTANFSWMRGHLFDYTCAVIIYEMCVQEPTATVTNVRQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVAEELYQAGFISYPRTETDSFSSRTDLHTIVQEQQGHPEWGPYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSIGESGWSPDHRKLYELVVRHFLACVSQPAVGAETIVEIDIAGELFSSSGRVILAKNYLDVYRYESWGGSMIPTYTVGQQFIPTTLTLDSGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLDRFYATKDANTRFTPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKAVSEGNKSKAEVLASSLQQMKDCFLDARLNKVKLLEAMAIFFERSNRTGSNEMHAAGEVVRRCGHCQESDMVLRQSRDGNFMVGCLGYPQCRNAVWLPGSVSEAAVTTNICNSCTPGPVYLIQFKFRQLEIPPNYNVNHLGCIGGCDDILKQLIEICGTGPRMPARARGPTAAPSNAHQTNTRQVVCMYCQETGHSSNNCPSQTSGSRNARRRGMNQHSGEASISCSTCGMPCVLRTANTANNRGRKFYSCPSQECNFFVWEDSLNNSTGGRSVSRTNSFPTSNPSRNGGRGRGSRNGTHAATATFVSATGDPISGRRCFVCGDPSHFANVCPNRGA 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0267 913 Pfam Topoisomerase DNA binding C4 zinc finger 637 674 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
Sto4g0267 913 Gene3D Topoisomerase I, domain 2 176 600 IPR013824 -
Sto4g0267 913 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Sto4g0267 913 SMART toprim5 7 142 IPR006171 -
Sto4g0267 913 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 700 IPR000380 GO:0003677|GO:0003917|GO:0006265
Sto4g0267 913 Pfam Toprim domain 9 153 IPR006171 -
Sto4g0267 913 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Sto4g0267 913 Gene3D - 754 789 - -
Sto4g0267 913 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Sto4g0267 913 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 700 - -
Sto4g0267 913 MobiDBLite consensus disorder prediction 845 875 - -
Sto4g0267 913 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Sto4g0267 913 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Sto4g0267 913 Pfam Zinc knuckle 762 778 IPR001878 GO:0003676|GO:0008270
Sto4g0267 913 SMART topIaneu2 292 552 IPR003602 GO:0003677|GO:0003916|GO:0006265
Sto4g0267 913 Gene3D Bacterial Topoisomerase I, domain 1 625 674 - -
Sto4g0267 913 SUPERFAMILY Retrovirus zinc finger-like domains 751 783 IPR036875 GO:0003676|GO:0008270
Sto4g0267 913 Pfam GRF zinc finger 801 840 IPR010666 GO:0008270
Sto4g0267 913 ProSiteProfiles Toprim domain profile. 7 154 IPR006171 -
Sto4g0267 913 ProSiteProfiles Zinc finger CCHC-type profile. 763 778 IPR001878 GO:0003676|GO:0008270
Sto4g0267 913 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 600 IPR023405 -
Sto4g0267 913 Gene3D - 3 169 - -
Sto4g0267 913 Pfam DNA topoisomerase 170 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto4g0267 913 SMART c2hcfinal6 894 910 IPR001878 GO:0003676|GO:0008270
Sto4g0267 913 SMART c2hcfinal6 762 778 IPR001878 GO:0003676|GO:0008270
Sto4g0267 913 ProSiteProfiles Zinc finger CCHC-type profile. 893 910 IPR001878 GO:0003676|GO:0008270
Sto4g0267 913 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto4g0267 913 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto4g0267 913 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto4g0267 913 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto4g0267 913 PRINTS Prokaryotic DNA topoisomerase I signature 514 528 IPR013497 GO:0003677|GO:0003916|GO:0006265
Sto4g0267 913 MobiDBLite consensus disorder prediction 771 793 - -
Sto4g0267 913 CDD TOP1Ac 173 600 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0267 Sto-Chr4 2010605 2023368 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0267 K03165 - jre:109018851 1597.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0267 4 2010605 2023368 Sto4g0267 4 2010605 2023368 ECH