Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0216 ATGGGAGAGCGGAAACTTTGCTCTTTGGGGCTCCTTGCGGTGCTCCTCTTGATTGCTTCTGCTTCGTTTCAGATGCTTTCCGCATCTGATGATAACGATGATGCGATCTTCTACGAGTCATTTGACGAAGATTTTGAAGGCCGTTGGATTGTATCCGAGAAGGAGGACTACAAAGGTGTCTGGAAGCATGATAAGAGTGAGGGTCACGAAGACTATGGACTCTTGGTCAGTGAGAAAGCAAGAAAATACGCTATAGTAAAAGTGCTTGATGAGCCTGTAAGTCTTAAGGATGGAACAGTTGTTCTCCAGTTTGAGACTCGTCTCCAGAATGGCCTTGAATGTGGTGGTGCATATCTGAAGTATCTTCGACCACAGGAAGCTGGATGGAAAGCCAAGGAATTTGACAATGAATCTCCATATTCTATCATGTTTGGTCCTGATAAGTGTGGGGCCACAAACAAGGTGCACTTCATTTTCAAGCATAAGAATCCGAAGAGTGGGGAGTATGTAGAACACCACCTGAAGTATCCCCCCTCTGTCCCATCTGACAAACTGTCTCATGTTTACACGGCTATTTTGAAGCCTGACAATGAgttgaaaattttgattgaTGGGGAGGAGAAGAAAACTGCCAATGTCTTATCTTCTGAGGATTTTGAGCCCCCGCTTATCCCTCCCAAGACAATCCCCGATCCTGAAGATAAGAAACCTGAGGACTGGGATGAGAGAGCCAAAATTCCAGACCCAGATGCTGTGAAGCCAGAGGACTGGGATGAGGATGCACCCATGGAAATTGAAGATGAAGAAGCTGAGAAGCCAGAAGGTTGGTTAGATGACGAGCCTGAGGAGATAGATGACCCAGAAGCAACTAAGCCAGAAGATTGGGACGATGAGGAGGATGGTGAATGGGAAGCCCCAAAGATTGATAACCCGAAGTGTGAAGCTGCCCCTGGTTGTGGTGAATGGAAGAGGCCAATGAAGAGGAATCCAGCTTACAAAGGAAAATGGCATGCCCCCCTAATTGATAATCCCAATTATAAGGGTATTTGGAAGCCCAGGGATATTCCAAACCCTGACTACTTCGAACTCGAGAAACCTGATTTTGAGCCTATTGCTGCAATTGGCATTGAGATTTGGACAATGCAAGATGGTATACTCTTTGACAATGTTTTGATCGCCAATGATGATAAGATTGCTGAGTCCTACAGGGAGACTACATGGAAGCCTAAGTTTACCGCcgagaaagagaaacaaaaggcCGAGGAGTTGGCTCCTGAAGCAGGTGGTCTTGCAACTTACCAGAAAAAGGTATTTGAGCTCCTATACAAGATCGCAGACATTCCCTTCCTCAGTGACTACAAGCTTAAGATATACGATCTCATTGAAAAGGGGGAGAAGCAACCAAATCTAACTATAGGAATTCTTGCATCCGTTGTAGTCGtctttttgacaattttcttcAGGATCATATTTGGTGGCAAGAAGAAGCCTGTGAGTAGCAATGCAAGAGTCGAGAAGACAAACACACAAACCCAACCCGCAGAAACTTCTAACGACCAAAGCAACGCAGAGAAGGAAGAGAACGACGAAAAGGAGGAAACATCTAATGCTCCACGTCGGAGGACAAGGAGAGATAACTGA 1641 0.4424 MGERKLCSLGLLAVLLLIASASFQMLSASDDNDDAIFYESFDEDFEGRWIVSEKEDYKGVWKHDKSEGHEDYGLLVSEKARKYAIVKVLDEPVSLKDGTVVLQFETRLQNGLECGGAYLKYLRPQEAGWKAKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKYPPSVPSDKLSHVYTAILKPDNELKILIDGEEKKTANVLSSEDFEPPLIPPKTIPDPEDKKPEDWDERAKIPDPDAVKPEDWDEDAPMEIEDEEAEKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPKIDNPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIDNPNYKGIWKPRDIPNPDYFELEKPDFEPIAAIGIEIWTMQDGILFDNVLIANDDKIAESYRETTWKPKFTAEKEKQKAEELAPEAGGLATYQKKVFELLYKIADIPFLSDYKLKIYDLIEKGEKQPNLTIGILASVVVVFLTIFFRIIFGGKKKPVSSNARVEKTNTQTQPAETSNDQSNAEKEENDEKEETSNAPRRRTRRDN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0216 546 ProSitePatterns Calreticulin family repeated motif signature. 284 296 IPR018124 GO:0005509
Sto4g0216 546 SUPERFAMILY P-domain of calnexin/calreticulin 222 362 IPR009033 GO:0005509|GO:0005515
Sto4g0216 546 MobiDBLite consensus disorder prediction 212 321 - -
Sto4g0216 546 Pfam Calreticulin family 37 392 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Sto4g0216 546 ProSitePatterns Calreticulin family signature 2. 142 150 IPR018124 GO:0005509
Sto4g0216 546 Gene3D Calreticulin/calnexin, P domain 222 366 IPR009033 GO:0005509|GO:0005515
Sto4g0216 546 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 221 IPR013320 -
Sto4g0216 546 MobiDBLite consensus disorder prediction 502 519 - -
Sto4g0216 546 PANTHER - 196 546 - -
Sto4g0216 546 PANTHER - 13 195 - -
Sto4g0216 546 Coils Coil 514 534 - -
Sto4g0216 546 ProSitePatterns Calreticulin family signature 1. 107 122 IPR018124 GO:0005509
Sto4g0216 546 MobiDBLite consensus disorder prediction 520 546 - -
Sto4g0216 546 MobiDBLite consensus disorder prediction 500 546 - -
Sto4g0216 546 MobiDBLite consensus disorder prediction 229 258 - -
Sto4g0216 546 MobiDBLite consensus disorder prediction 259 304 - -
Sto4g0216 546 Gene3D - 37 402 - -
Sto4g0216 546 PANTHER CALRETICULIN AND CALNEXIN 13 195 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Sto4g0216 546 PANTHER CALRETICULIN AND CALNEXIN 196 546 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Sto4g0216 546 PRINTS Calreticulin signature 109 127 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Sto4g0216 546 PRINTS Calreticulin signature 138 154 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Sto4g0216 546 PRINTS Calreticulin signature 236 249 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Sto4g0216 546 PRINTS Calreticulin signature 284 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Sto4g0216 546 PRINTS Calreticulin signature 341 360 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Sto4g0216 546 PRINTS Calreticulin signature 373 393 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0216 Sto-Chr4 1614492 1617365 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0216 1 546 Miscellaneous Gene Families AT5G61790 74.223 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0216 K08054 - gmx:100802236 881.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0216 4 1614492 1617365 Sto4g0216 4 1614492 1617365 ECH