Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0150 ATGGATGTGTTACAAGAATTGCTTAATGTGACTCTGATTCCATTTGCTTTCTTTGTATTACTTGTGGTTGTGCCTCCCTTTTATCTCTTCAAATTTCTATCTTTACTTTTCAAAACATCTAAACACAATAATGAATCCGTCGCCGGAAAAGTGGTCCTCATCACCGGAGCCTCTTCAGGAATCGGCGAGTGTTTGGCCTATGAGTATGCAAGAAGAGGGGCTCGTTTAGCACTTGTAGCCAGGAGGGAGGATCGTCTACGAGCAGTTGTAGATAAAGCATTAGAATTGGGTGCATCTGATGCTATTTTCGTTGTTGCTGATGTTTCCAATATTCAAGACTCTCAGCGATTCATTCAAGAGACTATCAACCATTATGGCCAATTGGATCATTTGGTGAACAATGCTGGGATTATGCAAGTCAAAATGTTTGAAGACTTCTCTGAGAAATTATCTGATTTGGCTCCAATCATGGATATAAATTTCTGGGGTTCTGTGTATGCGACACATTTCGCGATCCCACACTTGAGAAAAAGCAGAGGAAAGATCGTTGCCATTTCTTCAGTGGCAGGATCATACCCCACTCCAAGAATGAGCTTCTACAATGCAAGTAAAGCAGCAATGACAAGCTTCTATGAGACATTGAGGGTGGAATTGGGTGAAGATATTGGAATAACCATAGTCACTCCTGGCTTTGTTAAGTCAGAAATGACACCAAATGAGTTCATGTCACAGGTTCAGGCTAAGACAGTGCCAATTGAATCCACAGAAAGTTGTGCAAAGGCCATATTAAACAGCACTTGTCGTGGAGACTTGTATCTGATAGAACCTTCTTGGGTCAGAATATTTGTGTGGTTGAACATGTTTTTTCCAGCTCTTGTGGAGTGGTCTTCCCACTATATGATGGTGAAGAAGCCAGCTCAGGCtgcaaataaaagaaattaa 942 0.4098 MDVLQELLNVTLIPFAFFVLLVVVPPFYLFKFLSLLFKTSKHNNESVAGKVVLITGASSGIGECLAYEYARRGARLALVARREDRLRAVVDKALELGASDAIFVVADVSNIQDSQRFIQETINHYGQLDHLVNNAGIMQVKMFEDFSEKLSDLAPIMDINFWGSVYATHFAIPHLRKSRGKIVAISSVAGSYPTPRMSFYNASKAAMTSFYETLRVELGEDIGITIVTPGFVKSEMTPNEFMSQVQAKTVPIESTESCAKAILNSTCRGDLYLIEPSWVRIFVWLNMFFPALVEWSSHYMMVKKPAQAANKRN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0150 313 Pfam short chain dehydrogenase 50 240 IPR002347 -
Sto4g0150 313 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Sto4g0150 313 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 50 235 - -
Sto4g0150 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 303 IPR036291 -
Sto4g0150 313 PANTHER RETINOL DEHYDROGENASE-RELATED 1 305 - -
Sto4g0150 313 Gene3D - 36 307 - -
Sto4g0150 313 PRINTS Glucose/ribitol dehydrogenase family signature 51 68 IPR002347 -
Sto4g0150 313 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Sto4g0150 313 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Sto4g0150 313 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Sto4g0150 313 PRINTS Glucose/ribitol dehydrogenase family signature 220 237 IPR002347 -
Sto4g0150 313 PANTHER - 1 305 - -
Sto4g0150 313 PIRSF 11-beta-HSD1 4 312 - -
Sto4g0150 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Sto4g0150 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Sto4g0150 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0150 Sto-Chr4 1131211 1143449 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0150 50 257 Acyl Lipid Metabolism Gene Families AT3G55310 31.441 1.33e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0150 K22418 - pop:7463142 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto4g0150 4 1131211 1143449 Sto4g0150 4 1131211 1143449 ECH