Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto4g0013 ATGCGCCGGACTGTACTTCTCGTCGCACGTGAAACATTCACCTCGCCGCCGTTTCTCCGCCACTTCCTTCGGCGTCAACCATCGCACCTTGCTCTTGGCGTTGCTGGATGTACTCGATGCGGATTTCCTCTCTTCGGTGCATTTTGTTTCAATGCTGCGTGCAGGTACAATAATGCTGCTCTGCTTGCTGTTTGCTTCGGTTTGGGCCACGGGTCTGCTAGGGTTGGGCCGGGTTGGAGCCCACTTGATCATGAAGCAGATAATACTACCAACTTCATTGCTAGTTATGCTGTTAGCATACCAAATTTAGCGGTTGAGGATGTAATCATGAAATTCAAGGATTTGCACCAAAAACTGAAAGTGtcaccttcatcatcatcatttgagCAGCTTATTATGTATATGTGTGAGTTACACGAGGTGCATGAAGCTCTTAACCTTGTTGATGAAATGTGCGAAGCAGGCTTTACCTTATCATTTGAGGTGTTAAACTCTATATTACGAATTTGTGAGGAAGCTTGTGAATATAATCTGGTGCATCGTGTCTACTCTATTATACGTCACAACAATTTGAAGGCAACTAGTGAAACATTCAAGTGCATGATAAACTTGTGCGTCAAGATGAAAGATTTTCAAAGTGCATATAAGATGcttgatgatttggaagaaaTGAATATGAAGCCTACTTCGAGCATGTACAATGCTATAATGGCAGGATATTTTAGGGAGAAAGACATCAGTGGTGCGGTGAGGGTTATGGAGCAGATGATAGACGCCAACGTTGAACCTGATTCATTGACTTTCAGCTATTTGATTGGCAACTCTAAAACTGAAGAGGATATAACCATGTATTATGAAGAAATGAAGCAATTTGGAATCCAACCCACAAAGCAAATTTTCATTGCCCTCATAAATGCTTATGCAGCTTGTGGACAGTTGGAGAAGGCAAAAGAGGTGGTCTTACATCCAGGCATTCCGGCTAAGAGCTTAAATGAAATCAGGAGTGTCCTTGTCTCAGCTCTTGCATCACATGGGCAGTTGTCTGAATCTACTCTTGTTTATGATAATATCAAGAAAACCGGACACAAACTGGAGTCTAAAGCTGTTATAAATCTCATTGTGGAGCACATTCATTGTGATGGAAAATTGGATAAGTTGTTTCTGTTACTTGAGGAACTGAGTGATACAGTCTATTGGATAGATGGTTGCTTCAGAATTATCATGTATTGTGTTGCGAACAAGCATTTAAGATCTGCTGTTGGCTTGATCAAGCAGCTCAAGGATATCCCCAGTGATGAAGTACTTATGGAAGTTCTATTAAGTCAGATGTTTTCTATAATTGCATCATCAGAGTCCACACACCTGAAGTTTGGCCTGGACTTGTTTTGGGTAATAAGAAAAGATCTTGCCATTTTGCCGTCACGGCAATGTCTTGATTTTCTTCTAACTGCTTGCGCCAATGCCAAAGATTTGGATAATGTTCGTAAAATTTGGAAAGAATACGAGATTGCTGGATATCCTTATAATGTTTTGAGTTACCTGAGGATGTACCAGGCGCTTTTGGCTTCAGGAGACCATGAATCTGCCCGTGTTATACGCACTAAAATTGGAAGAGATGATCCCCATGTTGGCGAAGTCATGGAAGCTTGTAAAAATACTTACATTGTGGCATCCCTTGGAATGTTTTATTTGCCATTGGGTGTCATCTTATTTGGCAGTGGAGGAACAGGTTATGTAAAGAGAATAGATTCAGTATGCCCTTTGAACCACATAAGATTATTCTGCATCATGCAAAGAATTTCATGCAGGCATGGGTTGGCAAAGAATGTTGCACTCCTAGCTAACCTCAGAAATAGGTCGGTATCTCGGTGGAGTAGGCCAAATCATGAATCTATGAAAGTAAATACTGATGGGGCTGTATGTCGAAACACAAAAATTGCTGGATGTGGTGGTATTATTAGAGATGAATATGGGAGTTGGAAGTTGGGCTTTAAGGCTAATACCGGCTTCTCAACTGTAAATGGAACAGAACTGTGGGGTATATACTATGGTTTGAAGACTGCTTCGGAAGTTGGTTTGAAGAAAATAATCATCGAATGTGATTCTAAAAGGGCTGTTGATGATGTAAATAATTGCAACTGCAGTATTGGAATTATGCACCCTACTTTGCGCCAAGTAAGAGATTTTCTTGCAAAAGATTGGGTGGTTCAGATTAAACTCATCGAGAGATCTGTTAACTGTTGTGCAAACTTGCTTGCTAAGACAGACTGA 2271 0.4029 MRRTVLLVARETFTSPPFLRHFLRRQPSHLALGVAGCTRCGFPLFGAFCFNAACRYNNAALLAVCFGLGHGSARVGPGWSPLDHEADNTTNFIASYAVSIPNLAVEDVIMKFKDLHQKLKVSPSSSSFEQLIMYMCELHEVHEALNLVDEMCEAGFTLSFEVLNSILRICEEACEYNLVHRVYSIIRHNNLKATSETFKCMINLCVKMKDFQSAYKMLDDLEEMNMKPTSSMYNAIMAGYFREKDISGAVRVMEQMIDANVEPDSLTFSYLIGNSKTEEDITMYYEEMKQFGIQPTKQIFIALINAYAACGQLEKAKEVVLHPGIPAKSLNEIRSVLVSALASHGQLSESTLVYDNIKKTGHKLESKAVINLIVEHIHCDGKLDKLFLLLEELSDTVYWIDGCFRIIMYCVANKHLRSAVGLIKQLKDIPSDEVLMEVLLSQMFSIIASSESTHLKFGLDLFWVIRKDLAILPSRQCLDFLLTACANAKDLDNVRKIWKEYEIAGYPYNVLSYLRMYQALLASGDHESARVIRTKIGRDDPHVGEVMEACKNTYIVASLGMFYLPLGVILFGSGGTGYVKRIDSVCPLNHIRLFCIMQRISCRHGLAKNVALLANLRNRSVSRWSRPNHESMKVNTDGAVCRNTKIAGCGGIIRDEYGSWKLGFKANTGFSTVNGTELWGIYYGLKTASEVGLKKIIIECDSKRAVDDVNNCNCSIGIMHPTLRQVRDFLAKDWVVQIKLIERSVNCCANLLAKTD 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto4g0013 756 Pfam PPR repeat 302 319 IPR002885 -
Sto4g0013 756 CDD RNase_H_like 634 754 IPR044730 -
Sto4g0013 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Sto4g0013 756 SUPERFAMILY Ribonuclease H-like 632 754 IPR012337 -
Sto4g0013 756 Gene3D - 630 756 IPR036397 GO:0003676
Sto4g0013 756 PANTHER OS02G0132600 PROTEIN 83 555 - -
Sto4g0013 756 Pfam Pentacotripeptide-repeat region of PRORP 136 267 IPR033443 -
Sto4g0013 756 PANTHER OS02G0132600 PROTEIN 83 555 - -
Sto4g0013 756 Gene3D Tetratricopeptide repeat domain 124 278 IPR011990 GO:0005515
Sto4g0013 756 Gene3D Tetratricopeptide repeat domain 405 559 IPR011990 GO:0005515
Sto4g0013 756 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Sto4g0013 756 Gene3D Tetratricopeptide repeat domain 279 404 IPR011990 GO:0005515
Sto4g0013 756 TIGRFAM PPR: pentatricopeptide repeat domain 197 229 IPR002885 -
Sto4g0013 756 TIGRFAM PPR: pentatricopeptide repeat domain 232 265 IPR002885 -
Sto4g0013 756 Pfam Reverse transcriptase-like 635 754 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto4g0013 Sto-Chr4 126835 166708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto4g0013 191 393 Miscellaneous Gene Families AT4G11690 23.113 8.15e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto4g0013 - - cam:101502375 607.06