Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3188 ATGAATTCCCAATTTCCAAATACTATTGGTATTCATCAATTCCCCAAACCCCTATTATCCTCTAAAACCCTTTTCACCTATTTCCCTCAATCTTCACCTCGCTTCTCTTCTTCTAAACGCCTTCTCAGAACCAGATTATGCCATAACAAGCCGTGCATTAGTCACAGCAAGCTCAGAATAAGTGCTTGCAAAGCTTCCGATTCGAAGTCCAATTCGCTTACAGTAACACAGAATGAAGAAGAACAAGATGCCGAGTCCGCTCAGCTATTCCAGaaactgaaggaggCTGAAAGGAAACGAATAAATGATTTAGAAGAATTTGAGAACAAAGCTAATGTGCAGTTGGAGAGGCAACTTGTCATGGCTTCATCCTGGAGCAGAACTTTGTTGACCTTGCGTGGCAAACTAAAGGGTACAGAGTGGGATCCAGAGAATTCACACAGGATAGACTTCAGTGATTTTTTGAAACTTCTTGACTCAAATAATGTCCAGTTTATGGAGTACTCAAATTATGGTCAAAACATATCAGTGATTCTACCATATTACAAGAATGGGAAAACAACAGGAACCAAAGGGAATCCTGAAGATATTGTGTTTCGGCGTCATGTAGTTGATCGGATGCCAATTGATAGTTGGAATGATGTTTGGAGAAAGCTACATCAACAAGTTGTTAACGTTGATGTCATTAATGTGGATGCTGTACCTGCAGAAGTATACTCTACCATTGCAACTGCAGTCATATGGTCTATGAGGCTTGCCCTAGCTGTTGGATTTTATGTATGGATTGATAATTTAATGAGACCAATATATGCAAAGTTGATACCTTGTGATTTGGGAACTCCTAGTCCACAAGCTAGGCAGCCACTAGAACTACGTGCACTTGGATCACTAGGCAAGAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAGAGGGAACTACAAGAGATTGTACGAATTTTGAAGAATGAGGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTGCTTCTCCATGGGCCTCCTGGAACTGGAAAAACATTGCTGGCTAAAGCAATTGCTGGTGAAGCAGGGCTGCCTTTTTTTGCAGCAAATGGCACCGATTTTGTAGAGCTGGCTAATTTTACTTCTCTTCACCAGATGTTTGTAGGGGTTGCTGCATCACGTGTTAAAGACCTTTTTGCTAATGCCAGATCGTATGCGCCTTCCATCATATTTATTGATGAGATAGATGCTATTGGTAGCAAGCGTGGAGGACCAGATATTGGTGGAGGTGGTGCAGAAAGAGAACAGGGTTTACTTCAAATACTGACTGAGATGGATGGATTTAAAGTTTCTACAGAACAGGTGCTTGTGATTGGTGCAACAAATAGATTGGATATTCTAGATCCTGCTCTCTTGAGGAAGGGTCGTTTTGATAAGATTATCAGAGTTGGATTACCCTCAAAAGATGGAAGATTAGCCATTTTGAAGGTGCATGCCAGAAATAAATATTTCCGTTCAGAGGAGGAAAAGGATATCCTACTTCAAGAAATTGCTGAACTTACAGAAGATTTTACTGGGGCAGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGAAAGGATTTGGATTACATTGGACGGGAAGAACTACGTGAGGCTTTAAAAAGGCAAAAAGGAACATTTGAAACAGGGCAAGAGGACAGTGCTGAAATTCCTGACGAATTGAGACTGAGATTGGCTTACAGGGAAGCAGCTGTTGCGGTTCTTGCATGTTACTTTCCTGAACCCCACCACCCTTTTGTTGAGACAGACATAAATTCCATCACCAGCCAGCCAAATATGCGGTATACTGAAATTTCTGGAAGGGTTTTTGCAAGAAAATCAGATTACGTAAATTCTATAGTGCGTGCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTTGGGATTGATAACTTGTGTTGGATCTCCGCAAACGCAACATTAAAAGCTTCAAGGCTTGCAGAATTTTTAATTCTGCAGACAGGAATGACTGCATTTGGGAAAGCATTCTACAGAAACGAAAGTGATCTTGTGCCTAATCTAGCAATGAAGTTTGAAGCACTCCGAGATGAGTATATGCGTTATGCTGTTGAGAAGTGTTCATCTGTGCTACGAGAGTACCATTCAGCTGTTGAGACAATCACAGATATTTTGCTTGAAGAGGGACAAATCAAAGCTGAGGAAATCTGGAAAATTTACAAGAGTGCTTCTCGTGTAGCTCAGCCTAATGTGATTCCAGTTGATGAATATGGAGCACTTATTTATGCTGGACGATGGGGAATCCATGGGGCTACTCTTCCAGGGAGGGTTACATTTGCGCCCGGCAATGTTGGATTTGCGACCTTTGGTGCACCCCGCCCAATGGAGACACAAATCATCAgtgatgaaacttggaaattAGTAGACGATATTTGGGATAAAAGGGTTCAAGAAATCAGACAGGAAGCTTCAAAGGAGATtgaagaagacaaagaaaaaccACAACTTTTGATGGCAAGCCATTTCCTATAA 2595 0.4042 MNSQFPNTIGIHQFPKPLLSSKTLFTYFPQSSPRFSSSKRLLRTRLCHNKPCISHSKLRISACKASDSKSNSLTVTQNEEEQDAESAQLFQKLKEAERKRINDLEEFENKANVQLERQLVMASSWSRTLLTLRGKLKGTEWDPENSHRIDFSDFLKLLDSNNVQFMEYSNYGQNISVILPYYKNGKTTGTKGNPEDIVFRRHVVDRMPIDSWNDVWRKLHQQVVNVDVINVDAVPAEVYSTIATAVIWSMRLALAVGFYVWIDNLMRPIYAKLIPCDLGTPSPQARQPLELRALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNEEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVELANFTSLHQMFVGVAASRVKDLFANARSYAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTEQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSKDGRLAILKVHARNKYFRSEEEKDILLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGREELREALKRQKGTFETGQEDSAEIPDELRLRLAYREAAVAVLACYFPEPHHPFVETDINSITSQPNMRYTEISGRVFARKSDYVNSIVRACAPRVIEEEMFGIDNLCWISANATLKASRLAEFLILQTGMTAFGKAFYRNESDLVPNLAMKFEALRDEYMRYAVEKCSSVLREYHSAVETITDILLEEGQIKAEEIWKIYKSASRVAQPNVIPVDEYGALIYAGRWGIHGATLPGRVTFAPGNVGFATFGAPRPMETQIISDETWKLVDDIWDKRVQEIRQEASKEIEEDKEKPQLLMASHFL 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3188 864 Pfam ATPase family associated with various cellular activities (AAA) 352 495 IPR003959 GO:0005524|GO:0016887
Sto3g3188 864 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 62 833 - -
Sto3g3188 864 Pfam AAA+ lid domain 522 566 IPR041569 -
Sto3g3188 864 Gene3D - 497 580 - -
Sto3g3188 864 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 570 IPR027417 -
Sto3g3188 864 Gene3D - 297 495 IPR027417 -
Sto3g3188 864 SUPERFAMILY FtsH protease domain-like 586 765 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Sto3g3188 864 ProSitePatterns AAA-protein family signature. 466 484 IPR003960 GO:0005524|GO:0016887
Sto3g3188 864 Coils Coil 79 99 - -
Sto3g3188 864 CDD AAA 319 496 - -
Sto3g3188 864 Coils Coil 514 541 - -
Sto3g3188 864 Gene3D Peptidase M41 581 768 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Sto3g3188 864 SMART AAA_5 348 498 IPR003593 -
Sto3g3188 864 PANTHER METALLOPROTEASE M41 FTSH 62 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3188 Sto-Chr3 36694985 36703713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3188 313 605 Miscellaneous Gene Families AT3G47060 46.758 2.43e-66 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3188 - - gmx:100804743 1414.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3188 3 36694985 36703713 Sto3g3188 3 36694985 36703713 ECH