Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3186 ATGAAGGGTGGAACTGTTCAGATTAACTGGCACGAAGGCAAACCTGTCCTAACCCTCGATTTCCACCCACTCTCCGCCACTCTCGCCACTGGCGGCGCCGATTTCGACATCAAGCTTTGGTCAGTAAAACCAGCAGAAGCACAAAAGAAGTTACCTGTAGTTACCTATCTGAATAGTCTGTCTTACCATAGTACTGCAGTAAATGTAATTCGCTTCACTTCTTCGGGGGAATTGCTGGCATCTGGCGCTGATGGAGGTGACCTTATAATATGGAAGTTACATACGACCGATACTGGTCAGACATGGAAGGTCCTCAAGATGTTAAGGTCTCATCACAAGGACATACTGGACCTTCAGTGGTCTCCCGATGCTGCATTTATCATTTCTGGATCAGTTGATAATAGTTGCATTATTTGGGATGTTAACAAAGGCACCAACCTTCAAACGTTGGATTCTCATGCCCATTATGTTCAAGGAGTTGCATGGGATCCTCTAGGGAAATATGTTGCTTCTCTTAGTTCTGACAGGACTTGCCGAATTTACATCAATAAGCCTAAAAAGTCTAAGGGAAACGAGAAAATCAATTATGTTTGTCAGCAAGTTATTTCCAAGGCAGAACATCCACTACTAGATAATTCTAAGTCAATAAATTATCATCTTTTCCATGATGAGACACTGCCATCTTTCTTCAGAAGATTAGCTTGGTCTCCTGATGGCTTGTTTCTACTTGTCCCTGCAGGCTCATACAAGATTGCTTCTGGATCTGATTCTGTAAACGCTGCTTACATATTTTCTAGGAAGGATCTCTCTAGGCCTGCCATACAACTTCCTTGCACAAGCAAAGCTGTGGTTGCTGTCCGGTTCTGCCCCATTTATTTTAGCCTTCGGGGAACAAACTCAGCTGGGTCATTTAAGCTCCCTTATCGCATCATTTTTGCTGTGGCCACTTTGAATTCGTTGTACATTTATGACACTGAGAGCAATCCTCCCATAGCTATAATGGCTGGTATTCACTATGCAGCAATAACAGACATCGCATGGTCACCTGATGCCCATTATTTGGCATTGTCATCTCAAGATGGTTACTGCACTTTAGTGGAATTTGAAAATAACGAACTAGGATCACCTATCCCCCCATCAGGGGAGGAAAAAGTCTCTGACACCAATAGTAAGGGACCTTTGCAGCCGGCTGACTGTATGGTCATTGAAGGAACTGGGAATATAGGTTCAGTCAAAGCAGAAAGCAGTAAAACTAAAGCAGAAGAAAAAGCTGACGATATGGTCATTGAGTCAACTAGCAACGTTGGTGTAGTGAATGCAGGAAGCAGGAAAACTGAAGCTGAAGAGAAGGCTGACGACATGGTCATTGAAGAAACTGGGAATGTTAGTGCAGCTGTAGCAGAAAGCAGTAAAACTGAAGCAGAAGAAAAGGCTGACAACATGGTGATCGAGGCAGTCGTTCCCGAGAGCAGGAAGATTGAAGCAGAAGAGAAAACTGACAATATGGTCATTGAAGATACTGGAAATGTTGGTGCACTTATAACAGATAGCAGTAAAAATGAAGCAGAGAATTCAAATAGGGTGAAATCAGAAGCTGAAGAGAAGGCAGAGAAACAAGTATCCAGTTTGGATGGCAAGAAGCGTATAACTCCTATTGCCATTGATCCATGA 1671 0.4315 MKGGTVQINWHEGKPVLTLDFHPLSATLATGGADFDIKLWSVKPAEAQKKLPVVTYLNSLSYHSTAVNVIRFTSSGELLASGADGGDLIIWKLHTTDTGQTWKVLKMLRSHHKDILDLQWSPDAAFIISGSVDNSCIIWDVNKGTNLQTLDSHAHYVQGVAWDPLGKYVASLSSDRTCRIYINKPKKSKGNEKINYVCQQVISKAEHPLLDNSKSINYHLFHDETLPSFFRRLAWSPDGLFLLVPAGSYKIASGSDSVNAAYIFSRKDLSRPAIQLPCTSKAVVAVRFCPIYFSLRGTNSAGSFKLPYRIIFAVATLNSLYIYDTESNPPIAIMAGIHYAAITDIAWSPDAHYLALSSQDGYCTLVEFENNELGSPIPPSGEEKVSDTNSKGPLQPADCMVIEGTGNIGSVKAESSKTKAEEKADDMVIESTSNVGVVNAGSRKTEAEEKADDMVIEETGNVSAAVAESSKTEAEEKADNMVIEAVVPESRKIEAEEKTDNMVIEDTGNVGALITDSSKNEAENSNRVKSEAEEKAEKQVSSLDGKKRITPIAIDP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3186 556 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Sto3g3186 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Sto3g3186 556 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Sto3g3186 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Sto3g3186 556 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 551 IPR045145 GO:0006335
Sto3g3186 556 Gene3D - 227 394 IPR015943 GO:0005515
Sto3g3186 556 MobiDBLite consensus disorder prediction 493 556 - -
Sto3g3186 556 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Sto3g3186 556 SUPERFAMILY WD40 repeat-like 11 365 IPR036322 GO:0005515
Sto3g3186 556 Gene3D - 5 210 IPR015943 GO:0005515
Sto3g3186 556 MobiDBLite consensus disorder prediction 522 544 - -
Sto3g3186 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Sto3g3186 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Sto3g3186 556 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 551 - -
Sto3g3186 556 SMART WD40_4 2 41 IPR001680 GO:0005515
Sto3g3186 556 SMART WD40_4 143 182 IPR001680 GO:0005515
Sto3g3186 556 SMART WD40_4 101 140 IPR001680 GO:0005515
Sto3g3186 556 SMART WD40_4 53 92 IPR001680 GO:0005515
Sto3g3186 556 SMART WD40_4 327 367 IPR001680 GO:0005515
Sto3g3186 556 Coils Coil 519 539 - -
Sto3g3186 556 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Sto3g3186 556 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Sto3g3186 556 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Sto3g3186 556 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Sto3g3186 556 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Sto3g3186 556 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3186 Sto-Chr3 36680668 36685732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3186 25 181 Miscellaneous Gene Families AT5G08390 27.389 8.38e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3186 K10751 - gmx:100784411 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3186 3 36680668 36685732 Sto3g3186 3 36680668 36685732 ECH