Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3056 ATGGCTGACACTTCGCCGGAGAGGAAATCCAGCTGTGGATTATTAAACGCAGTATTTGGACGACGAAACCTATGGCAACGGAAAACAGCGTCGCCATTGCCACCTACTTCCGCCGCCACCACAACCGGTAGCGAAACTTGCAATCCAAAGAGGCGGCGTGGCGAATTGATCCAAACGACCTCTCCGTCGCTCAAACCCACCGAACCAAACCGTATCGTCATTCAAGACAATCAAAGGAAACATCCCAACGAAACATCCACAACCATGCCTTCCAAAGTCTCCCCCACACAGACACAGACACAGACACAGACACAAACACAGGCTTACGTAAACCAAGGGCGAAAGGTGCCTAAAGAAGCCATTGGAATTTCTGGTGAGCTAGAAAGTATGATTACCGATCACCAAAAGTCCAAAGGAAGCAATACCTTGGTCCGAGCTTCCTCAAGTAATGTGATGCTGGTGGGCGATCTAGGAAACTTGAGGCAAgcagggaatgggaatggaaatgaaaatggacgATACTCGAACACAAGCTACGTCGCGAAAGAGAATAATagttataacaacaacaataataataacaacggTAAAACGAAGAAGGAGAGATCGAAAGACGAACAAGGGGGGTCATTGTGCAGAGCAATATCCACAAGAATGGATCCAGAGGAGTTGAAGATAATGGGGAATGAGGATTATAAGAATGGGAAATTTGCAGAGGCATTGACTCTGTATGATGCAGCCATAGCCATTGATCCCAATAAGGCTTCTTATAGGAGCAATAGAAGTGCAGCATTAACGGCTCTGGGAAGGATTTTGGAGGCAGTGTTTGAGTGTAGAGAAGCCATTCGGATCGAACCTCATTACCAAAGAGCTCATCATCGTTTGGGAAATTTGTATCTCAGATTAGGAGAAACAGACAAGGCCCAATATCATTTAAAACATGCAGGAGAAGAGGCAGATCCTGATGAGATTGCTAAAGTAAGGACACTTCAAGTTCATCTTAACAAGTGCACCGAGGCTCGTAGGTTACGAGATTGGAACACCTTGAAAAAGGAGACCGAATCTGCAATTTCAGTTGGTGCAGATTCTGCTCCTCAGATATTTGGTTTGCAAGCTGAGGCCCTTCTAAAGCTGCGTAAGCATCAAGAAGCAGATGAAGTTATGTCAAAGGGACCTCGTTTTGGGGATGATGAGTTGGCCAAGTTCTTTGGGCCTATTGGCTATGCAAATTTATTTGATGATGCTGTGGAGGTGGCTCAACGAGCAGTGAAGCTAGACTCAAATAACAAGGAAGCAAGCATGGTGATGAGGAAGGCTCGAGCCCTGGCAGCAGCTAGGTCACAAGGAAATGAGCTTTTCAGGGCATCAAAGTTCTCAGAGGCATTGGGTGCTTATGGAGAAGGGCTCGAGCATGAGCCATGTAATGCAGTTTTGCTGTGCAATAGAGCTGCTTGCCGATCCAAATTGGGTCAATTTGAGAGAGCTGTGGATGACTGTAATGCTGCTCTGAGTTTGCGTCCCTCATACATGAAAGCCAGATTGAGAAGAGCAGATTGTAATGCCAAGTTGGAAAGATGGGAAGCTTCGATTCAAGACTACGAAATTTTGGTGAGAGAAAGGCCAGAAGATGAGGAAGTAAAGAAGGCATTGTTGGATGTTCAGAAACAGATGAAGACACAACGAGGGAGGCTCCACGACACCTACATCGTCCAAGTCCCCAAGGACCAAATCTATCGAGTCCCTCCACCTGAAAACGCTAAAATCGTTGAACAACATCGTAACCCTAATCCCTCGGACTTGAAAAAGACCAAGACTCTCTCTCATCGTACAATTTCTTGCATTATCTGTCTTGTCGTATTTGTTATGATTGTTGTGACATTAATCGCCTTGTATATTAACTTCAAACCAAAGAATCCTCATATTTCCGTTAAGAAAGTTGAGGTGATAAGAAAACATAAAAACGAGACACCTCAATATTACCAAATATCGTTGGTGGTTGAAAACCCTAGTGGGAAATATGGGCTTGTGTATTCGCCTAATAAGGATGTTGATATTAATTTGTACTATGATAGTATCGTGGTAGCCACAGGGAAGTTTCCGAGGTTGTCGCAAGGACCAAGGGATTCATCGACGGTTAAGATTGAATTGGAAGGATCTAAAGGAAGACCTTTGGATCCTCAAATGAAAAGGAGTATGGATGGTAGAAGTAAAAATGGTAGAACTATTTCTTTAGAAATGGAGATGAAGCTTGAGATGATGGGGAAAATTGGGAGATTAGGGATTTATAGTATGAATCCCACTGTGAATTGTAAGATGAGGTTAAGCTCGTTGACCAAAGATGCTCGTGTGTTATCACAAGAATGCAAAGCCAGTGGGTGA 2379 0.4309 MADTSPERKSSCGLLNAVFGRRNLWQRKTASPLPPTSAATTTGSETCNPKRRRGELIQTTSPSLKPTEPNRIVIQDNQRKHPNETSTTMPSKVSPTQTQTQTQTQTQAYVNQGRKVPKEAIGISGELESMITDHQKSKGSNTLVRASSSNVMLVGDLGNLRQAGNGNGNENGRYSNTSYVAKENNSYNNNNNNNNGKTKKERSKDEQGGSLCRAISTRMDPEELKIMGNEDYKNGKFAEALTLYDAAIAIDPNKASYRSNRSAALTALGRILEAVFECREAIRIEPHYQRAHHRLGNLYLRLGETDKAQYHLKHAGEEADPDEIAKVRTLQVHLNKCTEARRLRDWNTLKKETESAISVGADSAPQIFGLQAEALLKLRKHQEADEVMSKGPRFGDDELAKFFGPIGYANLFDDAVEVAQRAVKLDSNNKEASMVMRKARALAAARSQGNELFRASKFSEALGAYGEGLEHEPCNAVLLCNRAACRSKLGQFERAVDDCNAALSLRPSYMKARLRRADCNAKLERWEASIQDYEILVRERPEDEEVKKALLDVQKQMKTQRGRLHDTYIVQVPKDQIYRVPPPENAKIVEQHRNPNPSDLKKTKTLSHRTISCIICLVVFVMIVVTLIALYINFKPKNPHISVKKVEVIRKHKNETPQYYQISLVVENPSGKYGLVYSPNKDVDINLYYDSIVVATGKFPRLSQGPRDSSTVKIELEGSKGRPLDPQMKRSMDGRSKNGRTISLEMEMKLEMMGKIGRLGIYSMNPTVNCKMRLSSLTKDARVLSQECKASG 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3056 792 Pfam Tetratricopeptide repeat 476 509 IPR001440 GO:0005515
Sto3g3056 792 Pfam TPR repeat 228 269 - -
Sto3g3056 792 Coils Coil 516 536 - -
Sto3g3056 792 MobiDBLite consensus disorder prediction 182 196 - -
Sto3g3056 792 MobiDBLite consensus disorder prediction 26 113 - -
Sto3g3056 792 PANTHER OS01G0616333 PROTEIN 5 561 - -
Sto3g3056 792 MobiDBLite consensus disorder prediction 79 112 - -
Sto3g3056 792 Gene3D Tetratricopeptide repeat domain 219 563 IPR011990 GO:0005515
Sto3g3056 792 MobiDBLite consensus disorder prediction 29 73 - -
Sto3g3056 792 MobiDBLite consensus disorder prediction 182 210 - -
Sto3g3056 792 SMART tpr_5 476 509 IPR019734 GO:0005515
Sto3g3056 792 SMART tpr_5 442 475 IPR019734 GO:0005515
Sto3g3056 792 SMART tpr_5 221 254 IPR019734 GO:0005515
Sto3g3056 792 SMART tpr_5 289 322 IPR019734 GO:0005515
Sto3g3056 792 SMART tpr_5 255 288 IPR019734 GO:0005515
Sto3g3056 792 SMART tpr_5 510 543 IPR019734 GO:0005515
Sto3g3056 792 ProSiteProfiles TPR repeat profile. 221 254 IPR019734 GO:0005515
Sto3g3056 792 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 561 IPR044534 -
Sto3g3056 792 SUPERFAMILY TPR-like 219 550 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3056 Sto-Chr3 35354083 35363202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3056 558 790 EF-hand Containing Proteins AT5G21130 28.033 1.52e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3056 - - mnt:21398403 694.501