Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3036 ATGGGTGCTGCGGGCTCCAAGCTCGAGAAAGCTCTTGGCGATCAATTTCCTGAAGGAGAGCGTTATTTTGGCCTAGAGAACTTTGGTAACACTTGTTACTGCAACAGCGTTTTGCAGGCACTATATTTTTGTGTTCCATTTCGGGAACAACTGCTAGAGTATTATGGAAATAACAAACCTGTTGGAGATGCAGAAGAAAATCTTCTAACCTGCTTGGCAGACTTATTTTCACAGATTACTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCAAAGCGATTTGTGCAGAGGTTGAAAAAACAGAATGAACTTTTTCGTAGCTATATGCACCAGGATGCCCACGAATTCTTGAACTTTTTGTTAAATGAACTTGTGGACATTTTGGAGAAAGAGGCCCAGGCTGCAAAGAATGAACGGGGGACTTCCCCTCCATCTGATACTGCAAATGGACCTAAGAATGGTTTAGCTAATGGTGGTCAGAAAGAGCCTTTTGTTACATGGGTGCACAAAAATTTTCAGGGAATACTCACCAATGAAACAAAGTGCTTGCGGTGTGAAACAGTGACAGCTAGGGATGAAACGTTTTTTGACTTGAGCCTTGATATTGAGCAGAATAGTTCAATCACAAGCTGCTTGAAAAACTTCAGTTCCACTGAGACACTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCTCACATCTTGGTCGTCCATCTTAAACGGTTTAAGTACATCGAACAGCTGGGCCGAAACAAGAAGCTGTCTTACCGGGTTGTCTTCCCTCTTGAACTGAAGTTAGGCAACACTGTTGAAGATGCAGATATTGAGTATTCCCTATTTGCCGTAGTTGTCCATGTTGGTAGTGGACCGAACCACGGACATTACGTCAGCCTCGTGAAAAGCCATAACCACTGGTTATTTTTTGACGATGAAAATGTCGAGATGATTGATGAGTCTGCCGTGCAGACATTCTTCGGGTCAGCACAGGAATATTCCAGCAACACAGATCATGGGTACATTTTGTTCTATGAGAGCATTGGCTCAGGTAACAAGAACTAG 1107 0.4282 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKPVGDAEENLLTCLADLFSQITSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKNERGTSPPSDTANGPKNGLANGGQKEPFVTWVHKNFQGILTNETKCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVVHLKRFKYIEQLGRNKKLSYRVVFPLELKLGNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESIGSGNKN 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3036 368 SUPERFAMILY Cysteine proteinases 21 362 IPR038765 -
Sto3g3036 368 CDD Peptidase_C19G 24 360 - -
Sto3g3036 368 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 366 - -
Sto3g3036 368 MobiDBLite consensus disorder prediction 134 160 - -
Sto3g3036 368 MobiDBLite consensus disorder prediction 138 154 - -
Sto3g3036 368 Coils Coil 118 138 - -
Sto3g3036 368 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 366 - -
Sto3g3036 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 293 311 IPR018200 GO:0004843|GO:0006511
Sto3g3036 368 Pfam Ubiquitin carboxyl-terminal hydrolase 23 359 IPR001394 GO:0004843|GO:0016579
Sto3g3036 368 Gene3D Cysteine proteinases 5 361 - -
Sto3g3036 368 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Sto3g3036 368 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 362 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3036 Sto-Chr3 35167373 35173281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g3036 24 333 Miscellaneous Gene Families AT2G24640 27.987 4.80e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3036 K11842 - gmx:100305765 709.909