Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g3015 ATGGGCGGACGAGGCAGGTCTCGCACTCAGAGAAAGCATTTCCGGCAGAGCAGAGAGAATGTGTGGAAGCGTTCGAAACCTGATCCTTCCTCTCAAAACCCTGACGCCACCGACGACGCCGCTGAAACTCCGAATCCTACTTGGACTCCCTTCGCCACACAGAACTCTGCTTTTGATGAGTACTACAAAGAGCAAGGTATAGTGACCTCGGAAGAGTGGGATGCATTCGTCGGAGTTCTCAGAACTCCATTGCCTGCAAGCTTCAGAATAAATGCTTGTAGCCAGTTTTCTGCAGACCTTAGGTCGCAATTGGAGAATGATTTTGTGCAAACTCTTCAGGCTGAGGTTGTTGAAGGGGATGATGCAGAGGCCATTAAACCTTTGCCATGGTATCCTGACAATCTTGCTTGGCATTCAAACTTCTCCCGTATGCAGCTGAGGAAGAACCAAACACTCGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATgGTGCCTCCCCTCTTCTTGAATGTACAGCCAAATCATTTTGTACTTGATATGTGTGCAGCACCAGGTTCAAAAACATTCCAATTGCTTGAGATTATACACCAATCTACTAAAGCAGGATCACTACCTGATGGAATGgtTATAGCTAATGATCTTGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAACGGATGTGCACAGCCAACTTAATTGTCACTAACCATGAAGCACAGCAGTTCCCAGGTTGCCGTTTAAATAGAAATCACGAAACATTGGAAACAGATCAGCATATTAGCCAACTTTTATTTGATAGCGTTCTGTGTGATGTCCCGTGCAGTGGAGATGGAACCCTTCGCAAGGCACCTGATCTTTGGAGGAAATGGAACACTGGGATGGGCAATGGGCTTTATAGCCTACAGGTTCTAATAGCTATGCGAGGTTTATCTTTACTTAAAGTTGGAGGGAGAATGGTATATTCAACTTGCTCTATGAATCCAATTGAGAATGAAGCTGTGGTTGCAGAGATTTTACGGAGGTGTGGAGGGTCCGTTGAACTTGTTGATGTCTCGGGTGAGCATCACCAACTTATCCGCCGGCCCGGTCTTAGGAGATGGAAGGTACGTGATAAGGGATCGTGGTTGGCCTCCTACAGAGATGTCCCCAAGTTTCGCAAAAATGCAGTTCTTCCCAGCATGTTTCCTTCTGGCCAAAGCTATCAGGATCTTGTTGACTGTAATCATAAGGCAGACACGGGAGATGATATTGATAAGGGTGCTGATGGAAACTCTGAAAGCAGCACTCAAGCAGTGGAGAACTCTGCTATGCAAGAGTTTACTGAGGAAGTTTCTGATTTACCTTTGGAGCGTTGCATGAGGATAGTACCTCATGATCAAAACACCGGTGCCTTCTTCATTGCTGTACTGCAAAAGGTTTCTCCTATTCCAGCAATTTCAATTcaggaaaaaccaaaaatagaaATTGATAAGCAGTGTGTAGAACCAAAAATTGAGGATTCAAATGTACTGCAAGTTAATTCCTTAGAAAGTACAAAAGAAGTTTTGGAAGAGGTCAATTTAACTGATCACAAACCCAGAGCAGAAGATTTGGAAGTTGGCCCATCTGTTGCATGTACAGAACAGGATTCAGAGGAAGCCCAAGAGCCTCTTAAAACAGAAAGCATAACAAAGACAACAGGAAAACGGAAGCTGCAGTTTCAAGGAAAATGGAGAGGCGTTGACCCTGTTTTCTTCTTCAAAGATGAAACCATTATTAACAGCATAAGGGAATTTTATGGTATTGATGAAAAGCTTCCGTTCAATGGTCACCTCGTTACTAGAAACAATGATACAAGCCATGTTAAAAGAATTTACTATGTCTCCAAGTCAGTCAAAGGTGTTCTTGAACTGAATTTCTCAGTTGGGCAGCAACTCAAAATAACATCCATTGGCCTGAAGATGTTTGAAAGACAGTCATCAAGAGAAGGAAGCTCAGCACCATGTGCTTTCCGAATATCATCTGAAGGATTGCCCCTTATTTTGCCATACATCACCAAGCAGATTCTATGTGCATCTCCGGTGGACTTCAAGCATCTTTTGCAGTACAAAGCTGTAAAATTTGGAGATTTTGTTGATGCTGAGTTTGGTGAAAAAGCAGCAAACCTAATGCCGGGCTATTGTGTAGTAGTTCTGGGTAAAGGGAAGAGAACAGCTTCTGAGTCCTTAGTAGTGGATGAATCAACCATAGCCATTGGATGCTGGAAAGGTAAGGCCAGTTTAACAGTAATGGTTACTGCAATGGACTGCCGAGAACTGCTTGAGAGACTTTTAGTTCGTCTAGACATCGATAAGGGCCCAGTGCATGAGGACGACAAACCTTCCTCCGATAAGGTCCCGGTGCATGAAGAGAACAAACCTTCCTCTGATGATGCCGGCGATGAAGTACAGGGAACTAATGGCATAGATGATTCAGAAGCTACGGAGAGTAAACAGTAG 2523 0.4336 MGGRGRSRTQRKHFRQSRENVWKRSKPDPSSQNPDATDDAAETPNPTWTPFATQNSAFDEYYKEQGIVTSEEWDAFVGVLRTPLPASFRINACSQFSADLRSQLENDFVQTLQAEVVEGDDAEAIKPLPWYPDNLAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLNVQPNHFVLDMCAAPGSKTFQLLEIIHQSTKAGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQQFPGCRLNRNHETLETDQHISQLLFDSVLCDVPCSGDGTLRKAPDLWRKWNTGMGNGLYSLQVLIAMRGLSLLKVGGRMVYSTCSMNPIENEAVVAEILRRCGGSVELVDVSGEHHQLIRRPGLRRWKVRDKGSWLASYRDVPKFRKNAVLPSMFPSGQSYQDLVDCNHKADTGDDIDKGADGNSESSTQAVENSAMQEFTEEVSDLPLERCMRIVPHDQNTGAFFIAVLQKVSPIPAISIQEKPKIEIDKQCVEPKIEDSNVLQVNSLESTKEVLEEVNLTDHKPRAEDLEVGPSVACTEQDSEEAQEPLKTESITKTTGKRKLQFQGKWRGVDPVFFFKDETIINSIREFYGIDEKLPFNGHLVTRNNDTSHVKRIYYVSKSVKGVLELNFSVGQQLKITSIGLKMFERQSSREGSSAPCAFRISSEGLPLILPYITKQILCASPVDFKHLLQYKAVKFGDFVDAEFGEKAANLMPGYCVVVLGKGKRTASESLVVDESTIAIGCWKGKASLTVMVTAMDCRELLERLLVRLDIDKGPVHEDDKPSSDKVPVHEENKPSSDDAGDEVQGTNGIDDSEATESKQ 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g3015 840 MobiDBLite consensus disorder prediction 26 52 - -
Sto3g3015 840 MobiDBLite consensus disorder prediction 795 840 - -
Sto3g3015 840 MobiDBLite consensus disorder prediction 795 819 - -
Sto3g3015 840 Gene3D Vaccinia Virus protein VP39 52 399 IPR029063 -
Sto3g3015 840 MobiDBLite consensus disorder prediction 1 52 - -
Sto3g3015 840 Pfam 16S rRNA methyltransferase RsmB/F 181 365 IPR001678 GO:0008168
Sto3g3015 840 PRINTS RNA (C5-cytosine) methyltransferase signature 191 201 IPR023267 GO:0001510
Sto3g3015 840 PRINTS RNA (C5-cytosine) methyltransferase signature 281 293 IPR023267 GO:0001510
Sto3g3015 840 PRINTS RNA (C5-cytosine) methyltransferase signature 331 347 IPR023267 GO:0001510
Sto3g3015 840 PRINTS RNA (C5-cytosine) methyltransferase signature 470 487 IPR023267 GO:0001510
Sto3g3015 840 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 4 791 IPR023267 GO:0001510
Sto3g3015 840 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 76 488 IPR001678 GO:0008168
Sto3g3015 840 PANTHER TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE-RELATED 4 791 - -
Sto3g3015 840 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 55 488 IPR029063 -
Sto3g3015 840 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 137 158 IPR023270 GO:0016428
Sto3g3015 840 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 365 384 IPR023270 GO:0016428
Sto3g3015 840 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 654 666 IPR023270 GO:0016428
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g3015 Sto-Chr3 34939745 34953710 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g3015 K15334 - gmx:100808859 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g3015 3 34939745 34953710 Sto3g3015 3 34939745 34953710 CCT
Sto3g3015 3 34939745 34953710 Sto3g3015 3 34939745 34953710 ECH