Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2907 ATGGCTTCCATTGCCGGATCAAACTGTGTCGCTTTCAAACCCGCCGCTGTCTCATCCAAGTTCGGAGATAACAGGAAAGTCTGTCATCTTCGTCAATGGTCTCCGATTCATGGAGCCAGACTTCAATGCAGATCCAATTCTTCATTCGGATTGTCTGGTGTAAGAGCTCAAGTTGCTACTCTTGAAGAAGCAGGAACTGGAGCAGCCCAAAATGTGGAATCGCCTGTTGTTGTCGTGACTGGAGCCTCCAGAGGTATTGGCCGAGCTATTGCATTGTCTCTTGGCAAAGCAGGTTGCAAGGTCCTGGTTAATTATGCAAGATCATCCAAGGAAGCAGAGGAGGTTTCCAAGGAGATTGAGGCATTTGGTGGACAAGCTCTTACATTCGGGGGAGATGTTTCTAATGAGGCAGATGTCGAGTCTATGATTAAAACTGCAGTTGATGCTTGGGGAACTGTTGATGTGTTAGTTAACAATGCAGGAATCACTAAGGATGGTTTGTTAATGAGAATGAAGAAATCCCAATGGCAGGATGTTATTGATCTGAATCTCACTGGTGTTTTTCTTTGCACGCAAGCCGCAGCCAAGATaatgatgaagaaaaagaagGGAAGGATAATCAACATTGCATCAGTTGTTGGTCTAGTGGGCAATGTTGGACAAGCCAATTATAGTGCTGCGAAAGCAGGAGTAATTGGTCTGACAAAAACTGTTGCAAAGGAATATGCCAGCCGAAAGATTAATGTCAATGCAGTTGCTCCAGGGTTCATTGCATCTGACATGACTGCCAAGCTAGGAGAGGACATTGAGAAAAAGATTTTGGAGACAATCCCCTTAGGAAGATATGGGCGACCAGAAGAAGTCGCAGGATTGGTGGAATTCTTGGCTCTTAATCCTGCTGCTAGTTACATGACTGGGCAGGTGTTAACTATTGATGGAGGAATGGTGATGTAA 954 0.4434 MASIAGSNCVAFKPAAVSSKFGDNRKVCHLRQWSPIHGARLQCRSNSSFGLSGVRAQVATLEEAGTGAAQNVESPVVVVTGASRGIGRAIALSLGKAGCKVLVNYARSSKEAEEVSKEIEAFGGQALTFGGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITKDGLLMRMKKSQWQDVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRKINVNAVAPGFIASDMTAKLGEDIEKKILETIPLGRYGRPEEVAGLVEFLALNPAASYMTGQVLTIDGGMVM 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2907 317 CDD BKR_SDR_c 76 316 - -
Sto3g2907 317 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 211 239 IPR020904 GO:0016491
Sto3g2907 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 76 317 IPR036291 -
Sto3g2907 317 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 75 260 - -
Sto3g2907 317 Gene3D - 74 317 - -
Sto3g2907 317 PRINTS Glucose/ribitol dehydrogenase family signature 76 93 IPR002347 -
Sto3g2907 317 PRINTS Glucose/ribitol dehydrogenase family signature 151 162 IPR002347 -
Sto3g2907 317 PRINTS Glucose/ribitol dehydrogenase family signature 198 214 IPR002347 -
Sto3g2907 317 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Sto3g2907 317 PRINTS Glucose/ribitol dehydrogenase family signature 245 262 IPR002347 -
Sto3g2907 317 PRINTS Glucose/ribitol dehydrogenase family signature 278 298 IPR002347 -
Sto3g2907 317 Pfam Enoyl-(Acyl carrier protein) reductase 81 315 - -
Sto3g2907 317 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 77 316 IPR011284 GO:0004316|GO:0006633|GO:0051287
Sto3g2907 317 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 37 317 - -
Sto3g2907 317 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 37 317 - -
Sto3g2907 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 162 IPR002347 -
Sto3g2907 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 212 IPR002347 -
Sto3g2907 317 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2907 Sto-Chr3 33746579 33750153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g2907 2 317 Acyl Lipid Metabolism Gene Families AT1G24360 66.978 1.08e-154 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2907 K00059 - gmx:100806814 511.916