Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2181 ATGGCTCGTACTCCTCGCAGTTGTATTATTCCCTGTCATGGAAATTTCCGTCACAACGATTCCCAAGGTGGACCTTTTGCTGAGATGCAACCACCGGAACCCACGATTATCTCACCTCCTGGAACAGCCAATAATGCTTCAGAAACGGCGGCGCATTTTCCGGCAGCCACCGCAACCGCCGGACCAGCTACTACGGCCCAGCAATTCATCGACAACGCAGGCCCCTTAAAACGCCAAAGACGCCCCAGCGTCCGATTAGGCGACATTGGCGATCAGCCCGCCACACTCGCCTACGACTCGCATGCGCGCCGACCAACCAAGCATCCATGGAGGCTCCCCAAAGATTCTTCCTCTACTCCTTCATCTAAAGCCGTCAAGGCTCGCTCTTTAACTAATCTTGTCAACGGCGCTGGTGTATCCCAAGAGGGTCAAGAGTTTGAGTACATGAATAATCATAATGGAAACGGGAACGCGGAATTAGGGTTTCGAAAGGCCAAGGCCAAGCGCGGCACAGCCACCAAACGGGTAAGATCCAGTTGGGTAACGGCTTCGAGAGTCGTTGAGGGAGCGGAAGTTGACAGcagagaagatgaagatgaagggtTTCGAGATTTCGATCCAGATCCTAATAGCCCGCTCAAAGACCCCAGTCCAGTACACTCGGTCGATAACGTAGAGCTCGGTTCGTGGCAAGGGCAAAGAAGACCCACTGGTCGGCACGTGGTTTCGGAGACTCGGGAAGACGATGATGTGGAATTCGATCAATTGCCGGAATCGGATTTAAGGGATTTAAGGGATCGCAAGTGCGGGACGAGCGAGGGAGTAAGGTCGTGGCTCGTTGAATTGGGGCTAAGTAGGTATGCTCCCATATTTGAGATACATGAGGTAGACGATGAAGTGTTGCCCATGTTAACTTTTGAGGATCTCAAGGATATGGGGATTAATGCTGTTGGTTCCAGACGGAAAATGCATACTGCAATTCAAAAGCTTAGGGAAGGGTGCTCGCAAACTTCTTTTTATCGTAAGCTTGTTCAGGAGgaaataatattaaagaaaCATGTGAGTCATTCACTCAACCTCGTGGGTCAAGGAGCTGGAAAGGCACTGAAGCCAAAAGCCAACAAGTTTAAGAAGGGAAAGACACCTGTTAATGCTCCTAATGTTGAAAGGAAGGACCAAAAGGCAAGCAAATGCCATTTCTGTTGGAAAGATGGTCACTTCCAAAAGGATTGCCTGAAACGTAAAGCTTGGTGGCTTGATTCTGGTGCTACTACTCATGTATGTAATATGATGCAGGGATTCCTTACgatccaaaccataaatccaaatgAAAGTTTCTTATCTATGGGAAATCGCATGAAGGCTTCAATTGAAGGCATAGGGACTTACTGA 1392 0.4727 MARTPRSCIIPCHGNFRHNDSQGGPFAEMQPPEPTIISPPGTANNASETAAHFPAATATAGPATTAQQFIDNAGPLKRQRRPSVRLGDIGDQPATLAYDSHARRPTKHPWRLPKDSSSTPSSKAVKARSLTNLVNGAGVSQEGQEFEYMNNHNGNGNAELGFRKAKAKRGTATKRVRSSWVTASRVVEGAEVDSREDEDEGFRDFDPDPNSPLKDPSPVHSVDNVELGSWQGQRRPTGRHVVSETREDDDVEFDQLPESDLRDLRDRKCGTSEGVRSWLVELGLSRYAPIFEIHEVDDEVLPMLTFEDLKDMGINAVGSRRKMHTAIQKLREGCSQTSFYRKLVQEEIILKKHVSHSLNLVGQGAGKALKPKANKFKKGKTPVNAPNVERKDQKASKCHFCWKDGHFQKDCLKRKAWWLDSGATTHVCNMMQGFLTIQTINPNESFLSMGNRMKASIEGIGTY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2181 463 SUPERFAMILY Retrovirus zinc finger-like domains 384 417 IPR036875 GO:0003676|GO:0008270
Sto3g2181 463 MobiDBLite consensus disorder prediction 190 251 - -
Sto3g2181 463 MobiDBLite consensus disorder prediction 112 128 - -
Sto3g2181 463 SMART SAM_4 267 333 IPR001660 GO:0005515
Sto3g2181 463 SUPERFAMILY SAM/Pointed domain 271 334 IPR013761 -
Sto3g2181 463 CDD SAM_superfamily 275 329 - -
Sto3g2181 463 MobiDBLite consensus disorder prediction 70 128 - -
Sto3g2181 463 PANTHER PROTEIN BICAUDAL C HOMOLOG 1-A-LIKE 27 334 - -
Sto3g2181 463 ProSiteProfiles SAM domain profile. 270 333 IPR001660 GO:0005515
Sto3g2181 463 PANTHER SCP160 27 334 - -
Sto3g2181 463 ProSiteProfiles Zinc finger CCHC-type profile. 397 411 IPR001878 GO:0003676|GO:0008270
Sto3g2181 463 Pfam SAM domain (Sterile alpha motif) 271 331 IPR001660 GO:0005515
Sto3g2181 463 Gene3D - 275 333 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2181 Sto-Chr3 19247626 19281151 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2181 - - jre:109001211 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2181 3 19247626 19281151 Sto3g2181 3 19247626 19281151 ECH