Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g1638 ATGGAGACCTCTAGCTCAGATCAGACTCTGAAAGATGGCAAACTCTTCAGACATGCTGCAAATGCTGTCGCTTCGGCAACTATGACACCGCTCAATGTGGAAGCTCCGCCTAACAAGCTTCTTGAGTTAGTTGCTAagGGTCTTGCAGCGGAAAAAGATGATAGGTTGAGAGGGACTCCGTCAGCTTCATTTCATGATCTGGGTGCATCAATGCCTGCGGCGTATGGCTCTGTTCCTCCACCACGCGCTGCTGCTGTTGACTTCAGCAGTGCTGTGCTGGATACAAAAACCTCATCAAAGAGCTTTCCAAAGCATGAGACACGACACCTTTCAGAACATAAGAATATTGCCAGATGTGCTAGGTTTAGTCTTGATGGAAGGTTTGTTGCCACTGGAAGTACAGATACATCAATAAAGCTATTTGAGGTTGCAAAGATTAAGCAAATGTTGCTCCCAGATGCCAAAGATGGTCCTGTCCGACCTGTCATACGGACATTTTATGACCATATACAACCAATAAATGATCTGGATTTTCATCCGCAAGGTACCATCCTGATTTCTGGGGCTAAAGATCAGACAATAAAGTTTTTTGATATCTTGAAAACCAGTGCAAAGAGAGCATACAGAGTTATACAGGACACCCACAATGTGCGCTCTGTGTCTTTTCATCCCTCTGGGGATTTTCTTTTGGCAGGAACTGATCATCCAATTCCACATTTGTATGATATCAATACCTTTAAGTGTTTTTTACCAGCTAATGTCCCAGAGATTGGCATTAATGGAGCAATAAACCAGGCATGTTCAACTCTCGCCATGATTTTCACACAAGTTAGTACTATTATGATGCCAGTCTTCTCTGTCTTGATCAAGCAGATCAGATATTCTTGTACAGGAGGCATGTATGTTACAGCATCCAAAGATGGTGCCATTCGGTTATGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAATAGGAGCACATGGAACAGCTGAAGTGACCAGTGCAAATTTTACTAAAGATCAAAGGTTTGTGCTCTCTTGTGGCAAGGATTCTACTATAAAGCTTTGGGAAGTTTCCTCTGGAAGATTAGTTAGACAATATCTTGGAGCCACACATACTCAGCTAAGATGCCAGGCTATTTTCAATAACACAGAAGAATTTATTCTATCCATAGATGAATTAACCAATGAGATCGTTGTTTGGGATGCTATGACAGCAGAAAAGGTGGCAAAGTGGCCGTCTAATCATGCCGGAGCACCTCGATGGCTCGAACACTCTCCGATAGAAGCTGCTTTTGTTTCCTGTGGAACCGATAGGTCAATACGGTTCTGGAAGGAAATTCTATGA 1350 0.4311 METSSSDQTLKDGKLFRHAANAVASATMTPLNVEAPPNKLLELVAKGLAAEKDDRLRGTPSASFHDLGASMPAAYGSVPPPRAAAVDFSSAVLDTKTSSKSFPKHETRHLSEHKNIARCARFSLDGRFVATGSTDTSIKLFEVAKIKQMLLPDAKDGPVRPVIRTFYDHIQPINDLDFHPQGTILISGAKDQTIKFFDILKTSAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHPIPHLYDINTFKCFLPANVPEIGINGAINQACSTLAMIFTQVSTIMMPVFSVLIKQIRYSCTGGMYVTASKDGAIRLWDGITANCVRSIIGAHGTAEVTSANFTKDQRFVLSCGKDSTIKLWEVSSGRLVRQYLGATHTQLRCQAIFNNTEEFILSIDELTNEIVVWDAMTAEKVAKWPSNHAGAPRWLEHSPIEAAFVSCGTDRSIRFWKEIL 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g1638 449 PRINTS G protein beta WD-40 repeat signature 301 315 IPR020472 -
Sto3g1638 449 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Sto3g1638 449 PRINTS G protein beta WD-40 repeat signature 433 447 IPR020472 -
Sto3g1638 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 367 IPR001680 GO:0005515
Sto3g1638 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
Sto3g1638 449 CDD WD40 106 446 - -
Sto3g1638 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 323 IPR001680 GO:0005515
Sto3g1638 449 SUPERFAMILY WD40 repeat-like 102 446 IPR036322 GO:0005515
Sto3g1638 449 Gene3D - 285 448 IPR015943 GO:0005515
Sto3g1638 449 ProSitePatterns Trp-Asp (WD) repeats signature. 345 359 IPR019775 -
Sto3g1638 449 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 16 266 IPR044633 GO:0005848|GO:0031124
Sto3g1638 449 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 289 448 IPR044633 GO:0005848|GO:0031124
Sto3g1638 449 SMART WD40_4 275 314 IPR001680 GO:0005515
Sto3g1638 449 SMART WD40_4 103 142 IPR001680 GO:0005515
Sto3g1638 449 SMART WD40_4 204 242 IPR001680 GO:0005515
Sto3g1638 449 SMART WD40_4 406 446 IPR001680 GO:0005515
Sto3g1638 449 SMART WD40_4 317 358 IPR001680 GO:0005515
Sto3g1638 449 SMART WD40_4 159 198 IPR001680 GO:0005515
Sto3g1638 449 Pfam WD domain, G-beta repeat 163 198 IPR001680 GO:0005515
Sto3g1638 449 Pfam WD domain, G-beta repeat 214 235 IPR001680 GO:0005515
Sto3g1638 449 Pfam WD domain, G-beta repeat 319 357 IPR001680 GO:0005515
Sto3g1638 449 Pfam WD domain, G-beta repeat 107 141 IPR001680 GO:0005515
Sto3g1638 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 363 - -
Sto3g1638 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 199 - -
Sto3g1638 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 151 IPR001680 GO:0005515
Sto3g1638 449 Gene3D - 83 269 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto3g1638 163 448 Miscellaneous Gene Families AT5G08390 21.107 1.52e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g1638 K14406 - jre:108996656 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g1638 3 12354703 12359770 Sto3g1638 3 12354703 12359770 ECH