LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto3g1637	ATGCCGCCATTTCAGTCTCTGCAACTTCGGAGGCTCTTACTTCGATCCTTCCGTTCTCCTTCACCATCCTTCAATTCTCTTTCACTGATTCAACCTCGTCTTCCTCTTCCACTCCCATCAGAATCCACTTCAAATCCCTTCTCACACACCGGACATTCCCAATCTCAATCCAGGAACCTCTTCACTGCACCCTCACTCTTCCTGTCCAGATCTTTCTCATCAGAGCCCTCCAAATCCCCAAGCGAATCCCTCCCAGAAGACTCCGATCCCATCGCGCAATCCCTCTCCAATGAGCTTCTCAAAGACCCTGACTCCGACCCTCTATCGGTCTCGCAGCGTCTTCAACTCAGCTTCTCTCATATCACTCCCACTCCCTCGCTTGTTCTTCAAACCCTCAATCTCTCCCCCGAAGCCGGCCGTACAGTCCTAGGGTTTAACCAATGGCTGATTTCGAGCTCCGAATTCACTCACACCGACGAAACGCTGTCGTATTTCGTCGCCTACTTCGGCCGGCGCAAGGACTTCAAGGCCACACACGAGGTTCTCGTGAGTGGGCGCGGCATCGCGGGGCCTAAAACCCTAGACGAAGCGGTTGATCGGCTCGTGCGAGCGGGGCGTCCCACTCAGGCGGTTTCGTTCTTCGAGACGATGGAGACGGATTACGGGTTGGAGCGTAGTCGCGATTCCTTGAGGCTAATTGTGGATAAGCTTTGCGAGAAAGGGTACGCGAGTTATGCTGAGAAAATGGTGAAGAATCTGGCAAACGAGTTCTTCCCCGATGAAACCATCTGCGATCTGTTAATCAAAGCTTGGTGTGTTGATGGAAAGCTCGACGAAGCTCGAAGACTCGCGGGGGAGATGTATCGAGGAGGGTTCGAGCTAGGGACATATGCCTATAACGCCATTCTGGATTGTGTGTGCAAGCTTTGCAGATTAAAAGACCCGTTTCGCCTCGATTCGGAGGTCGAAAAGGTGTTGGTGGACATGGATTCCAATGGGGTTCCAAGAAATGTGGAAACATTCAATGTGTTGATCACCAATTTGTGCAAGATTAGGAGGACTGAAGATGCAATGAAGTTGTTTTACAGGATCGGAGAATGGGGATGTAGTCCCAATGAGACTACATTTCTTGTTCTAACCAAGAGTTTGTATCAATCTGCGAGATTAGAGGAAGGGGATGAAATGATTGATAGGATGAAATCAGCTGGGTTTGGTGAAGCACTTGATAAGAAAGCTTATTACCAGTTCTTGAAGATTCTGTGTGGGATTGAGAGAATTGATCATGCATTGAGtgtgtttgggaagatgaaggCAGATGGGTGTGAAGTAGGGATCAAAACTTATGATTTGTTAATGGGGAAACTGTGTGCTCACAATCGTATTGATAAAGCCAATGCTCTGTTCAATGAAGCACAGAGTAGAGGTGTGGATGTGACACCAAAAGCATACAAGGTAGAGGCAAGGTATATGAAGAAGCCTAAGGctgagaagaaggagaagaagagggagaCTTTGCCTGAGAAAATGGCGAGGAAGAGAAGACGTCTAAAAGAGATTAGACTGAGTTTTGTGAAGAAGCCAAAACGAATGAGGCGTCGTGCTTATTGA	1608	0.4701	MPPFQSLQLRRLLLRSFRSPSPSFNSLSLIQPRLPLPLPSESTSNPFSHTGHSQSQSRNLFTAPSLFLSRSFSSEPSKSPSESLPEDSDPIAQSLSNELLKDPDSDPLSVSQRLQLSFSHITPTPSLVLQTLNLSPEAGRTVLGFNQWLISSSEFTHTDETLSYFVAYFGRRKDFKATHEVLVSGRGIAGPKTLDEAVDRLVRAGRPTQAVSFFETMETDYGLERSRDSLRLIVDKLCEKGYASYAEKMVKNLANEFFPDETICDLLIKAWCVDGKLDEARRLAGEMYRGGFELGTYAYNAILDCVCKLCRLKDPFRLDSEVEKVLVDMDSNGVPRNVETFNVLITNLCKIRRTEDAMKLFYRIGEWGCSPNETTFLVLTKSLYQSARLEEGDEMIDRMKSAGFGEALDKKAYYQFLKILCGIERIDHALSVFGKMKADGCEVGIKTYDLLMGKLCAHNRIDKANALFNEAQSRGVDVTPKAYKVEARYMKKPKAEKKEKKRETLPEKMARKRRRLKEIRLSFVKKPKRMRRRAY	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto3g1637	535	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	409	443	IPR002885	-
	Sto3g1637	535	Pfam	PPR repeat	447	476	IPR002885	-
	Sto3g1637	535	Pfam	PPR repeat	418	441	IPR002885	-
	Sto3g1637	535	Pfam	PPR repeat	266	291	IPR002885	-
	Sto3g1637	535	PANTHER	ATPASE EXPRESSION PROTEIN 3	47	534	-	-
	Sto3g1637	535	Pfam	PPR repeat family	337	383	IPR002885	-
	Sto3g1637	535	Gene3D	Tetratricopeptide repeat domain	395	475	IPR011990	GO:0005515
	Sto3g1637	535	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	337	371	IPR002885	-
	Sto3g1637	535	Gene3D	Tetratricopeptide repeat domain	315	394	IPR011990	GO:0005515
	Sto3g1637	535	Gene3D	Tetratricopeptide repeat domain	160	314	IPR011990	GO:0005515
	Sto3g1637	535	PANTHER	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PNM1, MITOCHONDRIAL	47	534	-	-
	Sto3g1637	535	MobiDBLite	consensus disorder prediction	37	57	-	-
	Sto3g1637	535	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	260	294	IPR002885	-
	Sto3g1637	535	MobiDBLite	consensus disorder prediction	71	90	-	-
	Sto3g1637	535	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	444	478	IPR002885	-
	Sto3g1637	535	MobiDBLite	consensus disorder prediction	491	512	-	-
	Sto3g1637	535	TIGRFAM	PPR: pentatricopeptide repeat domain	413	443	IPR002885	-
	Sto3g1637	535	TIGRFAM	PPR: pentatricopeptide repeat domain	340	373	IPR002885	-
	Sto3g1637	535	TIGRFAM	PPR: pentatricopeptide repeat domain	447	477	IPR002885	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto3g1637	188	509	Miscellaneous Gene Families	AT4G11690	22.222	1.53e-17	84.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto3g1637	-		-	jre:108994218	721.465

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto3g1637	3	12351019	12352626	Sto3g1637	3	12351019	12352626	ECH